Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 528 / 0 BGLU17 beta glucosidase 17 (.1.2) AT3G60120 525 / 0 BGLU27 beta glucosidase 27 (.1) AT3G60130 525 / 0 BGLU16 beta glucosidase 16 (.1.2.3) AT5G42260 520 / 0 BGLU12 beta glucosidase 12 (.1) AT5G44640 518 / 0 BGLU13 beta glucosidase 13 (.1) AT2G44450 516 / 3e-180 BGLU15 beta glucosidase 15 (.1) AT3G60140 516 / 3e-179 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24550 506 / 4e-176 BGLU32 beta glucosidase 32 (.1) AT1G26560 501 / 1e-174 BGLU40 beta glucosidase 40 (.1) AT2G44470 494 / 1e-170 BGLU29 beta glucosidase 29 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G223800 [exp] 1041 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 1037 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223900 [exp] 1037 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222800 [exp] 1036 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G224000 [exp] 1034 / 0 AT3G60120 526 / 0.0 beta glucosidase 27 (.1) Potri.001G223700 [exp] 1034 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223716 [exp] 1034 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223704 [exp] 1033 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223708 [exp] 1032 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031808 [exp] 559 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 555 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 550 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 533 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 532 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 525 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 505 / 3e-176 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 506 / 5e-176 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 506 / 6e-176 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10036885 [exp] 498 / 3e-173 AT1G26560 778 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G223500.3 pacid=42788961 polypeptide=Potri.001G223500.3.p locus=Potri.001G223500 ID=Potri.001G223500.3.v4.1 annot-version=v4.1 ATGGGAAGTATTGCCAAGTTGAGTCGTAATTCTTTCCCAGATGGTTTCGTTTTTGGATCTGCTTCATCAGCTTACCAGTTCGAAGGTGAAACAAACAGGA GAGGCAAAGGGCCAAATATATGGGACACCTTCATCGAGGAGCATCCAGAGAGGATAAGTGACCACAGCAATGCAAAGGTGGCAGTTGATTTCTATAATCG CTATAAGGAAGATGTGCAAAGAATGAGGGGAATGGGAATGGATGCTTTCAGATTCTCTATTTCTTGGTCTAGGGTATTACCACATGGCAGACTAAGTGCT GGAATAAACGAAGAAGGGATCCAGTTTTACAACAATCTCATCGATGAGCTCATAAAAAACAATATACAACCTTATGTAACTCTCTTTCACTGGGATACTC CACAAGCAATTGAAGACAAATATGGTGGTTTCTTAAGCTCTAATATTTTAAATGATTTCCGAGACTTCGTGGAGCTTTGCTTTCAAAAATTTGGAGACCG AGTGAAGCACTGGATCACTTTAAACGAGCCTTATATGTTCAGTGTCAATGGTTATGACACGGGCACAATAGCACCTGGCAGACTTTCAACTTTGGAGAAT TATCCAAGCCAACCCAAAATCTCTGGTGTCACTGAGGTTTACATAGTAACCCATCATCTACTGCTTGCTCATGCAACAGCTGTGAAAGTATACAAGGAAA AGTATCAGACATGTCAAGGAGGAAAAATTGGGATAACACTTGTTTCTTATTGGTTTGAACCTTACTCAACTAGTGAAAGTGATCGGATGGCAACTAAACG AAGCCTTGATTTTATGCTTGGATGGTACATGGATCCTCTAACTAAAGGTGACTATCCACAGAATATGCACGACTACGTTGGAGGAAGATTGCCTAGATTC AGTGAGGAGGAATCCAAGATGCTGAGAGGATCTTATGACTTTATTGGGGTCAATTACTACACGACATACTATGCTCAGAATGTTGAGGATGTTAACTATA AAAATATTGGGTTTATGGAAGATGCTCGTGTTAACTGGCCAGGGGAGAGAAATGGAATCCCAATAGGCCCACAGGCGGGTTCAAGTTGGCTTTATATTTA TCCCGAAGGTATTCGTCATCTCTTGAATTACATAAAGGATGCGTATGAAAATCCAACAATATATATCACTGAAAATGGAGTTGATGACGTGAATTCCTCG TCATTAGAGGAAGCCCTCAATGATGCCATAAGAGAGCAATATTATAAAGACATTTTCCACAATGTTCTGAGATCTATCAATGACCATGGTGTCGATATCA AGGGGTTTTTTGCTTGGTCATTCTTGGATGATTTTGAATGGGGATCCGGTTATAGTTCAAGGTTTGGTCTCTTCTACATTGACTACGAAAACAACTTGAA ACGATATGCCAAAAATTCTGTGAAGTGGTTTAAGCAATTTCTGAAGAAGGACGAAAGTACTCAACTCAACGATAACATAAAATCAAAATCTCGAATGGAG GACGGATCAGCTCGTAGCCGTAAGAAGTCGAGAATTGAATAA
AA sequence Show only first row Show all	>Potri.001G223500.3 pacid=42788961 polypeptide=Potri.001G223500.3.p locus=Potri.001G223500 ID=Potri.001G223500.3.v4.1 annot-version=v4.1 MGSIAKLSRNSFPDGFVFGSASSAYQFEGETNRRGKGPNIWDTFIEEHPERISDHSNAKVAVDFYNRYKEDVQRMRGMGMDAFRFSISWSRVLPHGRLSA GINEEGIQFYNNLIDELIKNNIQPYVTLFHWDTPQAIEDKYGGFLSSNILNDFRDFVELCFQKFGDRVKHWITLNEPYMFSVNGYDTGTIAPGRLSTLEN YPSQPKISGVTEVYIVTHHLLLAHATAVKVYKEKYQTCQGGKIGITLVSYWFEPYSTSESDRMATKRSLDFMLGWYMDPLTKGDYPQNMHDYVGGRLPRF SEEESKMLRGSYDFIGVNYYTTYYAQNVEDVNYKNIGFMEDARVNWPGERNGIPIGPQAGSSWLYIYPEGIRHLLNYIKDAYENPTIYITENGVDDVNSS SLEEALNDAIREQYYKDIFHNVLRSINDHGVDIKGFFAWSFLDDFEWGSGYSSRFGLFYIDYENNLKRYAKNSVKWFKQFLKKDESTQLNDNIKSKSRME DGSARSRKKSRIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223500 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G222800 [exp]	5.56	0.9901
AT5G25320			ACT-like superfamily protein (...		Potri.018G025500 [exp]	12.36	0.9671
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223800 [exp]	18.33	0.9877
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	20.00	0.9766	Pt-PGIP.4
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223720 [exp]	21.44	0.9874
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	22.11	0.9653
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223700 [exp]	23.23	0.9871
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.001G224000 [exp]	26.49	0.9868
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.002G056700 [exp]	28.61	0.9868
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037200 [exp]	29.46	0.9826

Compare expression of checked genes

Potri.001G223500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.