Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PAG1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27020 457 / 3e-165 PAG1 20S proteasome alpha subunit G1 (.1) AT1G53850 127 / 1e-35 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 127 / 1e-35 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 120 / 4e-33 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 118 / 2e-32 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 117 / 4e-32 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G47250 118 / 5e-32 PAF2 20S proteasome alpha subunit F2 (.1) AT5G42790 118 / 6e-32 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT5G35590 109 / 9e-29 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 107 / 8e-28 PAA2 20S proteasome subunit PAA2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020800 [exp] 473 / 1e-171 AT2G27020 453 / 5e-164 20S proteasome alpha subunit G1 (.1) Potri.001G162900 [exp] 124 / 9e-35 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 121 / 1e-33 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.016G015400 [exp] 120 / 4e-33 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.006G008800 [exp] 120 / 7e-33 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 117 / 4e-32 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 117 / 4e-32 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.005G229200 [exp] 117 / 2e-31 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.002G033900 [exp] 116 / 2e-31 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037416 [exp] 464 / 4e-168 AT2G27020 478 / 1e-173 20S proteasome alpha subunit G1 (.1) Lus10041296 [exp] 440 / 9e-159 AT2G27020 430 / 4e-155 20S proteasome alpha subunit G1 (.1) Lus10037454 [exp] 127 / 3e-33 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 127 / 4e-33 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10017135 [exp] 117 / 9e-32 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10042145 [exp] 117 / 1e-31 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10024269 [exp] 117 / 1e-31 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10007396 [exp] 116 / 3e-31 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10004235 [exp] 113 / 8e-31 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10036210 [exp] 114 / 1e-30 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00227 [poplar] [flax] Proteasome Proteasome subunit CL0052 [poplar] [flax] NTN PF10584 [poplar] [flax] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Potri.001G224100.3 pacid=42790741 polypeptide=Potri.001G224100.3.p locus=Potri.001G224100 ID=Potri.001G224100.3.v4.1 annot-version=v4.1 ATGAGCAGCATAGGAACAGGCTACGATCTGTCGGTCACTACTTTCTCGCCGGATGGCCGTGTTTTTCAGATCGAATACGCTGCTAAAGCCGTCGATAACA GTGGTACTGTTATTGGAATCAAGTGCAAAGACGGGATTGTTATGGGTGTGGAGAAGCTAATAGCTTCGAAGATGATGTTACCCGGTTCCAATAGGAGAAT CCACGCCGTTCATCGTCATTCCGGCATGGCTGTTGCTGGTCTAGCGGCTGATGGGAGACAAATTGTTGCACGAGCCAAAAGTGAGGCAACCAATTATCAG AGTGTTTATGGTGAACCTGTTCCTATCAAGGAGCTTGCAGATCGTGTTGCTAGTTATGTGCATTTGTGCACTCTCTATTGGTGGCTTAGGCCATTTGGTT GTGGGGTGATTCTTGGTGGTTATGACAGAGATGGGCCTCAATTATACATGGTCGAACCATCTGGCATCTCCTATAGATATTTTGGCGCTGCAATAGGGAA AGGGAAGCAGGCTGCTAAAACAGAAATTGAAAAGTTGAAGCTATCTGAAATGACATGCCGAGAAGGGGTTATTGAAGTAGCGAAAATCATTTACAAGGTA CATGATGAAGCAAAGGACAAGGCCTTTGAACTGGAAATGAGCTGGGTTTGTGACGAATCAAAGAGACAGCATGAAAAGGTTCCTGATGACCTCTTAGAGG AAGCCAAGGCAGCAGCTCGGAATGCTCTGGAAGAAATGGATGCTGATTAA
AA sequence Show only first row Show all	>Potri.001G224100.3 pacid=42790741 polypeptide=Potri.001G224100.3.p locus=Potri.001G224100 ID=Potri.001G224100.3.v4.1 annot-version=v4.1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHAVHRHSGMAVAGLAADGRQIVARAKSEATNYQ SVYGEPVPIKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGVIEVAKIIYKV HDEAKDKAFELEMSWVCDESKRQHEKVPDDLLEEAKAAARNALEEMDAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.001G224100 [exp]	0	1	Pt-PAG1.1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.006G008800 [exp]	2.23	0.8823	Pt-PAC1.1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	2.44	0.8579
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	4.00	0.8496
AT2G31490			unknown protein		Potri.006G077400 [exp]	6.16	0.8144
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	6.92	0.8239
AT2G46540			unknown protein		Potri.002G173101 [exp]	7.07	0.8751
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.006G141300 [exp]	7.93	0.8380
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	9.74	0.8416	PBE1.1
AT2G40660			Nucleic acid-binding, OB-fold-...		Potri.019G058700 [exp]	10.72	0.8099
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	12.84	0.8282	Pt-GDI.1

Compare expression of checked genes

Potri.001G224100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.