Plant FIBer expression Database

Potri.001G224400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21840 360 / 3e-127 UREF urease accessory protein F (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039022
[exp]
355 / 4e-125 AT1G21840 342 / 1e-120 urease accessory protein F (.1)
Lus10027319
[exp]
347 / 5e-122 AT1G21840 330 / 2e-115 urease accessory protein F (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01730 UreF UreF
Representative CDS sequence
>Potri.001G224400.2 pacid=42788035 polypeptide=Potri.001G224400.2.p locus=Potri.001G224400 ID=Potri.001G224400.2.v4.1 annot-version=v4.1
ATGGAAGGCAAGAAGGAAATAGATGGAGCAAAAGAGAAACCTGCTTCTACGAGTTTTTCTTTGCATTGGAGCCAGTGGCAACTGATCGATTCGATTCTTC
CTACTGGTGGGTTTGCTCATTCGTTTGGTATTGAGGCAGCTATTCAAGCACGTGTGATTTTGAATCCAGAAGACTTCCAAACTTATGTAATTCATGTTTT
GGAGAACACGGGAAGCTTGCTTCTTCCTTATGTGTACTCCGCAGCAATGTGTCCGGATTTGGATAATTGGCGGAAACTTGATAGAATGCTTGATGCTACT
TTAACTAATGAAGTAAGTCGAAAGGCGTCTGTTTCACAAGGATCGGCGCTAATGAGAGTGGCTGCGGCTGTGTTTACAGAAATCCCATCTCTTAAAATTA
TGAGAGAGATGTCTCTTGGTTCTGGGATTGTTGCTTTTCACCATGCTCCTGTCTTCGGGATTGTTTGTGGGCTTCTGGGCATGGATAGTGAAACTTCTCA
GAGGGCTTACATGTTTATCACATTGAGAGATGCTTTTTCAGCTGCAACAAGGTTGAATTTGGTGGGACCTCTTGGTGCTGCTGTATTGCAGCATCAGGTG
TCTATTGCTGCAGAAACTATGCTAAAAAGGTGGATGAACCGTGAGGTTGAGGATGCATGTCAGACAGCTCCTTTGCTTGATACTTTACAGGGATGCCATG
GCTATTTATTTTCAAGATTATTCTGCTCTTGA
AA sequence
>Potri.001G224400.2 pacid=42788035 polypeptide=Potri.001G224400.2.p locus=Potri.001G224400 ID=Potri.001G224400.2.v4.1 annot-version=v4.1
MEGKKEIDGAKEKPASTSFSLHWSQWQLIDSILPTGGFAHSFGIEAAIQARVILNPEDFQTYVIHVLENTGSLLLPYVYSAAMCPDLDNWRKLDRMLDAT
LTNEVSRKASVSQGSALMRVAAAVFTEIPSLKIMREMSLGSGIVAFHHAPVFGIVCGLLGMDSETSQRAYMFITLRDAFSAATRLNLVGPLGAAVLQHQV
SIAAETMLKRWMNREVEDACQTAPLLDTLQGCHGYLFSRLFCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21840 UREF urease accessory protein F (.1... Potri.001G224400
[exp]
0 1
AT4G06676 unknown protein Potri.004G222300
[exp]
1.41 0.7598
AT1G16250 Galactose oxidase/kelch repeat... Potri.010G004500
[exp]
4.24 0.7548
AT1G73760 RING/U-box superfamily protein... Potri.015G043900
[exp]
5.74 0.7450
AT3G14430 unknown protein Potri.014G105250
[exp]
6.32 0.6904
AT4G14710 ATARD2 RmlC-like cupins superfamily p... Potri.008G157500
[exp]
11.13 0.7422
AT3G26600 ARO4 armadillo repeat only 4 (.1) Potri.010G045500
[exp]
12.40 0.7078
AT2G28710 C2H2ZnF C2H2-type zinc finger family p... Potri.010G209400
[exp]
13.26 0.7035
AT4G23860 PHD finger protein-related (.1... Potri.001G091600
[exp]
16.73 0.6348
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Potri.015G137200
[exp]
24.33 0.6484
AT1G07650 Leucine-rich repeat transmembr... Potri.018G145536
[exp]
27.16 0.7155

Potri.001G224400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.