Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11440 298 / 1e-94 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 295 / 1e-93 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G26960 246 / 9e-76 MYB ATMYB81 myb domain protein 81 (.1) AT2G32460 216 / 7e-64 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT4G26930 212 / 2e-63 MYB ATMYB97 myb domain protein 97 (.1) AT5G55020 207 / 4e-60 MYB ATMYB120 myb domain protein 120 (.1) AT4G21440 164 / 6e-46 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 161 / 2e-45 MYB ATMYB41 myb domain protein 41 (.1) AT2G26950 162 / 7e-45 MYB ATMYB104 myb domain protein 104 (.1) AT4G05100 160 / 2e-44 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018700 [exp] 825 / 0 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.003G189700 [exp] 463 / 2e-158 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 450 / 2e-153 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 212 / 3e-62 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.013G130900 [exp] 197 / 3e-55 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.004G033100 [exp] 163 / 4e-45 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 162 / 5e-45 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G224100 [exp] 156 / 9e-44 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.019G118200 [exp] 158 / 1e-43 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036103 [exp] 486 / 9e-169 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10026787 [exp] 462 / 4e-159 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10026142 [exp] 368 / 4e-115 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10008685 [exp] 353 / 3e-114 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10027189 [exp] 214 / 2e-62 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10040063 [exp] 212 / 2e-62 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 210 / 9e-61 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 209 / 4e-60 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10018418 [exp] 161 / 8e-45 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10003557 [exp] 157 / 1e-43 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G224500.3 pacid=42789859 polypeptide=Potri.001G224500.3.p locus=Potri.001G224500 ID=Potri.001G224500.3.v4.1 annot-version=v4.1 ATGTGTGGTAGAGTTTTATGGCATATTCATGAGATGAGCAGCATGATGAATGGGACCGAGGATAATAAGAGGTCCAAGGGTCGTCAAGATTCACCTGCAG CTGATGAAGTTAATGGTGGGGGAATGGTGGGTGGGATTACTCCTTTGAAGAAAGGCCCATGGACCTCTGCAGAAGATGCTATTTTGATAGACTATGTCAA GAAGCATGGAGAAGGGAATTGGAATTCTGTCCAGAAGCACTCAGGGCTCTTCCGATGTGGAAAAAGCTGCCGTCTGCGATGGGCGAATCATCTACGACCA GATCTGAAGAAGGGTTCATTCACTCCAGAGGAAGAGAACCGCATCATTGAACTCCATGCTAATATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGC CTGGAAGGACAGATAACGAGATAAAGAACTACTGGAATACAAGAACAAAGAGACTGCAACGTGCTGGCTTACCACTTTACCCCCCTGAAGTTTGTCTGCG AGCATATAAGATGAATAAAGATGGTCAAAATATGGGCAAATTGCAAACAGGGGACGCACATGATCCTGATATGATGCTGACTGACCATTTTAAGATTCCG GAAGTGGAATTCAAAACTCTGGCACTCAATCCAGGTGTCCTGTCTTATTCAACGGGTCTTTTCGATGCTTCTGCAAGCAGCATGCTGAAACAAGGTGTAG GTTCATCCTATGGTCAGGGCCTTGTGTTCCCAACAATTCATCCTGCCAAACGCTTTAGAGAGTCACAGACCATATTCACTGGTCTTGATGGTAGTGTCAG TGGTGGAATACCAGAGTTCGATCAATTTACAGATTATCATCGCGGAAAGATTACAGGGAACTTTGGGTTATCTTCCCCATATGGTTGTGATTTGAGCAAC TATGACCAGTCATCATGCGGTGTTCTTCCTGGCAGTCATGCCATATTAAATGGCAATTCTTCTTCTTCATCTTCTTCTGAGCCCATATATAGGGCCACGA AGTTAGAGCTCCCTTCACTCCAATATTCAGAAACTCAACAAGATAGCTGGGGAACACCTGCTTCCCCACTGCCTTCACTTGAGTCTGTTGATACTTTTAT TCAGTCTCCTCCAACCAAGGAGACAAAGTCAGATGGTCTGTCACCAAGAAGTAGTGGTCTCTTGGAGGCAGTACTCTATGAATCACGAACTCTGAAATAC TCAAAGAAATGTCCAGGCCACCAAACTTCAGATGCTTTTGTCCCAATTGGTTGTGGAGTGCATAGTTCACCTTTGAATGCCTGCGCAGCAGAATGGGAAC TACATGCTGATCTTAACTCTCCTTCAGGTCATTCTGCTTCCTCATTGTTTAGCGAGTGCACCCCGATCAGTGGAAGCTCGTCGGATGAACAAGCATATAA TGTCAAGCCTGAGCCAATCGATCAGGTTTTGCCATATGTTGAAGCGAGAGAAGTTCTCAATCAGACAGACTGTAACAGGCCAGATGTTTTGCTTGGCTCA ACCTGGTTTGCGCCCAGCAATAAATACCATAATGACCAATTTTTTCAGACTGATGATGTAGCGGCACTTCTTGGTGGAGATCAACCGTGA
AA sequence Show only first row Show all	>Potri.001G224500.3 pacid=42789859 polypeptide=Potri.001G224500.3.p locus=Potri.001G224500 ID=Potri.001G224500.3.v4.1 annot-version=v4.1 MCGRVLWHIHEMSSMMNGTEDNKRSKGRQDSPAADEVNGGGMVGGITPLKKGPWTSAEDAILIDYVKKHGEGNWNSVQKHSGLFRCGKSCRLRWANHLRP DLKKGSFTPEEENRIIELHANMGNKWARMAAELPGRTDNEIKNYWNTRTKRLQRAGLPLYPPEVCLRAYKMNKDGQNMGKLQTGDAHDPDMMLTDHFKIP EVEFKTLALNPGVLSYSTGLFDASASSMLKQGVGSSYGQGLVFPTIHPAKRFRESQTIFTGLDGSVSGGIPEFDQFTDYHRGKITGNFGLSSPYGCDLSN YDQSSCGVLPGSHAILNGNSSSSSSSEPIYRATKLELPSLQYSETQQDSWGTPASPLPSLESVDTFIQSPPTKETKSDGLSPRSSGLLEAVLYESRTLKY SKKCPGHQTSDAFVPIGCGVHSSPLNACAAEWELHADLNSPSGHSASSLFSECTPISGSSSDEQAYNVKPEPIDQVLPYVEAREVLNQTDCNRPDVLLGS TWFAPSNKYHNDQFFQTDDVAALLGGDQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Potri.001G224500 [exp]	0	1
AT1G78810			unknown protein		Potri.011G109600 [exp]	3.46	0.8027
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	6.24	0.8052
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	17.74	0.7620
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	21.07	0.7592
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	30.46	0.7459
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	39.49	0.7397	SGR2.1
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.005G183700 [exp]	40.09	0.6898
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103216 [exp]	45.66	0.7264
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	45.71	0.7369	Pt-PIL5.1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	46.28	0.6993	Pt-BZO2.3

Compare expression of checked genes

Potri.001G224500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.