Plant FIBer expression Database

Potri.001G224700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
AT1G30230 151 / 2e-45 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2)
AT5G19510 149 / 1e-44 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
AT5G12110 147 / 9e-44 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G018600
[exp]
172 / 5e-54 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Potri.012G096400
[exp]
157 / 6e-48 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Potri.015G094200
[exp]
155 / 4e-47 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037618
[exp]
152 / 6e-46 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Lus10013555
[exp]
152 / 1e-45 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Lus10036101
[exp]
148 / 2e-44 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Lus10026784
[exp]
148 / 2e-44 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Lus10017261
[exp]
149 / 2e-43 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00736 EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence
>Potri.001G224700.1 pacid=42789473 polypeptide=Potri.001G224700.1.p locus=Potri.001G224700 ID=Potri.001G224700.1.v4.1 annot-version=v4.1
ATGGCAGTCACTTTCTCAGATATCCACACAGAATCCGGCCTCAAATCCCTGGACGAGTATCTCGCCGGAAAATCTTATATCTCCGGAGATCAGATTTCCA
AAGATGACATCAAAGTTTACGGTGCTGTTTTGGAGAATCCTGGTGATGCTTTCACTAATGCTAGCAAGTGGTATGACTCTGTTTCTTCACAGCTTGCTTC
AAGCTTCCCAGGAAAAGCCACCGGTGTAAGAGTTGGTGCCGCTGCCGCTGCTCCCGTTGAAGCTGCCCCTGCCAAGGAGGCTGCTGGTGACGACGACGAC
GACGACTTGGATCTTTTTGGTGATGAGACTGAAGAGGACAAGAAGGCAGCAGAGGAGAGGGAGAAAGCTAAAAAGGGATCCTCCAAGAAGAAAGAGAGTG
GAAAATCTTCTGTTCTCTTGGATGTGAAGCCATGGGATGATGAGACAGACATGGTGGCGTTGGAGAAGGCAGTTAGGAGTATTGAGATGCCCGGTCTCTT
TTGGGGAGCATCAAAATTGGCTCCAGTTGGCTATGGAATCAAGAAGCTCCAGATCATGCTTACCATCATCGATGACCTTGTATCAGTGGATTCCCTCATT
GAGGAGCGTCTCACAGTCGAGCCTTGCAGCGAATATATTCAGAGCTGTGATATTGTTGCCTTCAACAAAATCTAA
AA sequence
>Potri.001G224700.1 pacid=42789473 polypeptide=Potri.001G224700.1.p locus=Potri.001G224700 ID=Potri.001G224700.1.v4.1 annot-version=v4.1
MAVTFSDIHTESGLKSLDEYLAGKSYISGDQISKDDIKVYGAVLENPGDAFTNASKWYDSVSSQLASSFPGKATGVRVGAAAAAPVEAAPAKEAAGDDDD
DDLDLFGDETEEDKKAAEEREKAKKGSSKKKESGKSSVLLDVKPWDDETDMVALEKAVRSIEMPGLFWGASKLAPVGYGIKKLQIMLTIIDDLVSVDSLI
EERLTVEPCSEYIQSCDIVAFNKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G18110 Translation elongation factor... Potri.001G224700
[exp]
0 1
AT5G07090 Ribosomal protein S4 (RPS4A) f... Potri.015G033700
[exp]
1.00 0.9255 Pt-RPS4.2
AT5G56670 Ribosomal protein S30 family p... Potri.012G086600
[exp]
7.00 0.9081 RPS30.2
AT5G48760 Ribosomal protein L13 family p... Potri.017G054600
[exp]
8.36 0.9201 RPL13.2
AT1G73230 Nascent polypeptide-associated... Potri.017G141100
[exp]
10.77 0.9176
AT3G53740 Ribosomal protein L36e family ... Potri.011G066000
[exp]
11.61 0.9195
AT1G26880 Ribosomal protein L34e superfa... Potri.001G195101
[exp]
13.41 0.9127
AT1G70600 Ribosomal protein L18e/L15 sup... Potri.006G202300
[exp]
21.21 0.9137 Pt-RPL27.4
AT1G26880 Ribosomal protein L34e superfa... Potri.015G106466
[exp]
25.09 0.9031
AT1G70600 Ribosomal protein L18e/L15 sup... Potri.010G045800
[exp]
28.98 0.9048
AT3G52590 HAP4, ERD16, UB... HAPLESS 4, EARLY-RESPONSIVE TO... Potri.012G024300
[exp]
31.78 0.8992 Pt-UBQ1.2

Potri.001G224700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.