Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 248 / 2e-73 Protein kinase superfamily protein (.1) AT1G55200 236 / 7e-69 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 235 / 1e-67 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G76370 203 / 3e-59 Protein kinase superfamily protein (.1) AT2G07180 201 / 4e-58 Protein kinase superfamily protein (.1.2) AT1G20650 195 / 3e-56 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G38560 200 / 2e-55 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G69790 192 / 2e-55 Protein kinase superfamily protein (.1) AT5G01020 192 / 5e-55 Protein kinase superfamily protein (.1) AT2G02800 192 / 6e-55 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035900 [exp] 476 / 8e-161 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 356 / 9e-114 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 254 / 6e-75 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 244 / 2e-71 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 237 / 8e-70 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.006G150100 [exp] 237 / 4e-69 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G009300 [exp] 202 / 5e-59 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 198 / 2e-57 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 194 / 2e-55 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036100 [exp] 517 / 6e-177 AT1G55200 201 / 1e-55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024111 [exp] 500 / 1e-169 AT5G56790 317 / 2e-98 Protein kinase superfamily protein (.1) Lus10041608 [exp] 492 / 1e-165 AT1G55200 318 / 4e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 271 / 1e-82 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 249 / 7e-74 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 246 / 3e-72 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 246 / 2e-71 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10012850 [exp] 198 / 8e-57 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10038087 [exp] 198 / 1e-56 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10009559 [exp] 204 / 5e-56 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G224800.2 pacid=42789971 polypeptide=Potri.001G224800.2.p locus=Potri.001G224800 ID=Potri.001G224800.2.v4.1 annot-version=v4.1 ATGGAAGGAGCTCAGAGGGTTTTGGTGATCCAAGATGCATCAAGGGAAGTTAGTTCAAGTGCCATCAAGTGGGCACTGCATGGGTTATCACTTAAGCCTG GAGATATGGTCACCCTTCTTGGTGTTCTTCACTTGGTCAATACCCCTTTGGGATACAAAAGCAGAACAGACAGTTCCATGTTCGGAGTAAATCAGAATAT TGTTGACAGAGAAGTTACAGGGAAGATAAATGAGTATGAAAATCATGGGGAACTCAAGGAGCTATCCAAGCTGTATGAAATACAAAAGGTTGAGTTGAAG ATAGAGGTGGCTACAGGGCCTTCACCAAAGACAGTTGCTTTAAAGATAGCTCAAGATTTGAAGGCAACATGGATTATACTTGACAGAACAATGAAGAAAG ACAGAAAATACTTCCTCCGAAAGCTTTCGTGTGGGATATCAAGAATGAAACGCAACAACAGCATTGAACAGTTGAGAGGACCAAAAGATTCAACAGAAGC CAATCAAAATGAAAGAGTACGCAACATCTGTCTATCTTATGATGAAATAATTCCCGGATCCCTAGAGGAGCAAGAGTTTTTCAGCATTGAACTTCTCCCT CCAAGGCAAACAGAAGTCATTCAACCAAGCCAGGTTGAAGCACTAACACGGAGCAGCGGCGGAGATGAAGTGGTGGTGGAAGAATGGCAACCTGAAGTGA TATTTCAAAATTCAATATGTAACCTTTGCAAGATTAGGCGACCGCATAGTGGATGGATAAGGGACTTCACGTTTGAAGAACTTCAAGCTGCTACAGATGA TTTTTCAGCAAAGAACACTATATATGAAGGTGGAATTGGTACTGCTTGCAGGGGTAAGCTAAGTAATAATCTGAAAATTGTCGTCAAGCAACACAAATCT TCAAGCCATCAAGGAGAGATGAATTTCAAATCAGCAGTCCATCTGCTCAAGAAAGCTAGACATGACAATGTGCTCATGCTACTGGGATCCTGTACAGAAC CAAGTGTCAGACTGCTTGTATACGAGTATGCATGCAATGGTTCAGTTAATCAACACATATCAAAGCACTGCCCCTTACCTTTGACATGGACAGAAAGGAT GAAGGTAGCAATGGGTGCTGCTAGAGGTTTAGACTACCTGCATAAGAACAACATAATTCATGGAAACATGAGAACAAGAAACATTGCTCTAAATCATGAT TTTGAACCAATGCTTGGAGATTTCGGCCTCTCAACAGAAAATCCATCAGATGATATAGATTTTGAAACTGGATACGTAGCCCCAGAATATCAAGAAAACA GGAAGCTTTCAACAAGGACAGATGTCTATGCCTTTGGCATAGTCCTACTGGAGCTGATCACTGGCAGGAATGCTGCAGACAAGAAGCTAGGGGAGAAAGG TCTTGTGAAATGGGCAAGGCCATTTCTGAAATACAAGAGGCTTCTTGAAATACTTGACCCCAGAATTGACAGCTCCCTTGATTCTGAACAGCTTTACTGG ATTGGTCTAGTGACACAGAAATGTCTCTGTGACAATCCTAAGAAACGATTAACCATGGATAAGGTGGCATCTGCGCTAGAATGCATAACAGAGAGAAAAT CATGCCAATTGATTCAAGATCTTGCTGCAGCCAAATCTTACTTCTACAGCACGTTTGAATTCAATGGATTTCGAAGGTATGATAAATCATTTAAAAGAGA CAGCTTCAGCGTAGAAATAGACGATGAAAGCCGAGCAAGCACATCATTTTCGCTTAATTCAGCAAGTTTCAGTAGGAGCCCCACAAGTAGTGTGAAGAGT GACAAAATGTGGAGAGAAAAATCTGGAAATGGAATATCACTGCGTTATGCAGAAATGCTTGACTAA
AA sequence Show only first row Show all	>Potri.001G224800.2 pacid=42789971 polypeptide=Potri.001G224800.2.p locus=Potri.001G224800 ID=Potri.001G224800.2.v4.1 annot-version=v4.1 MEGAQRVLVIQDASREVSSSAIKWALHGLSLKPGDMVTLLGVLHLVNTPLGYKSRTDSSMFGVNQNIVDREVTGKINEYENHGELKELSKLYEIQKVELK IEVATGPSPKTVALKIAQDLKATWIILDRTMKKDRKYFLRKLSCGISRMKRNNSIEQLRGPKDSTEANQNERVRNICLSYDEIIPGSLEEQEFFSIELLP PRQTEVIQPSQVEALTRSSGGDEVVVEEWQPEVIFQNSICNLCKIRRPHSGWIRDFTFEELQAATDDFSAKNTIYEGGIGTACRGKLSNNLKIVVKQHKS SSHQGEMNFKSAVHLLKKARHDNVLMLLGSCTEPSVRLLVYEYACNGSVNQHISKHCPLPLTWTERMKVAMGAARGLDYLHKNNIIHGNMRTRNIALNHD FEPMLGDFGLSTENPSDDIDFETGYVAPEYQENRKLSTRTDVYAFGIVLLELITGRNAADKKLGEKGLVKWARPFLKYKRLLEILDPRIDSSLDSEQLYW IGLVTQKCLCDNPKKRLTMDKVASALECITERKSCQLIQDLAAAKSYFYSTFEFNGFRRYDKSFKRDSFSVEIDDESRASTSFSLNSASFSRSPTSSVKS DKMWREKSGNGISLRYAEMLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56790			Protein kinase superfamily pro...		Potri.001G224800 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108701 [exp]	6.24	0.7862
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196900 [exp]	7.34	0.8373
AT1G58170			Disease resistance-responsive ...		Potri.016G060801 [exp]	7.74	0.8120
					Potri.002G177700 [exp]	19.07	0.8166
AT1G08440			Aluminium activated malate tra...		Potri.001G217300 [exp]	20.78	0.8080
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	24.00	0.8004
AT1G08440			Aluminium activated malate tra...		Potri.001G217400 [exp]	24.89	0.7960
AT5G41761			unknown protein		Potri.014G095000 [exp]	35.24	0.7705
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G450700 [exp]	38.88	0.7901
					Potri.005G189000 [exp]	39.11	0.7835

Compare expression of checked genes

Potri.001G224800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.