Plant FIBer expression Database

Potri.001G225100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26930 488 / 5e-173 CMK, CMEK, ISPE, ATCDPMEK, PDE277 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G021800
[exp]
627 / 0 AT2G26930 480 / 6e-170 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036098
[exp]
545 / 0 AT2G26930 566 / 0.0 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Lus10026783
[exp]
542 / 0 AT2G26930 566 / 0.0 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF00288 GHMP_kinases_N GHMP kinases N terminal domain
CL0677 GHMP_C PF08544 GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence
>Potri.001G225100.2 pacid=42789693 polypeptide=Potri.001G225100.2.p locus=Potri.001G225100 ID=Potri.001G225100.2.v4.1 annot-version=v4.1
ATGGCTTCTTCTCATCTTCTCTGCAATACTTTTCCCATTCAAACATCTTGCAATCTCTCAAGTAAAAGCAACATCTCTTCATTTAAGCCAAGTGGGTCCT
TTTCTTTTTGTCAAAAACTTCAATTTCAAAGGACCCCAGTTGTGAAAGCCACAAGAAAACAAGTAGAGCTGGTGTATGATCCTGATGGAAGGGTAAACAA
GTTGGCGGATGAGGTGGATAAACAGGCTCCTCTCTCAAGGCTCACTCTTTTCTCACCTTGCAAGGTTAATGTTTTCTTGAGAATAACCAGTAAGAGAGAA
GATGGGTATCATGATTTGGCATCTCTATTTCATGTGATTAGTCTCGGAGATGTAATTAAGTTCTCTTTGTCACCATCAAAAAGAATTGATCGATTATCAA
CCAATGTGTCTGGTGTACCTCTTACTGAAGATAATTTGATAATTAAAGCCCTTAACCTTTACAGGAAAAAGACTGGCACTGACAATTTCTTTTGGATTCA
TTTAGACAAAAAGGTGCCCACTGGAGCAGGACTTGGTGGTGGGAGCAGCAATGCCGCTACTGCCCTGTGGGCCGCAAATCAATTCAGTGGTTGTCTTGCT
ACTGAGAAGGAACTCCAAGAATGGTCAAGTGAGATTGGTTCAGATATCCCTTTCTTTTTTTCTCATGGAGCAGCCTACTGTACTGGCCGTGGTGAGATTG
TTCAAGATATTCCTTCACCAGTATCTTCAGGCATTCCAATGGTTCTCATGAAGCCCCCGCAGTCATGTTCAACTGCAGAAGTTTACAAGTGCTTTCAATT
GGATAAAACCAGTCAAGCTGATCCTTTAACATTGCTGGAGAAGATCTCAAGGAATGGAATATCTCAAGATGTATGTATCAATGATTTGGAACCTCCTGCC
TTTGAAGTTCTCCCCTCTCTCAAAAGATTAAAACAGCGTATAGCTGCAGCTGGTCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGTGGAAGCACAA
TAGTTGGGATTGGCTCACCAGATCCTCCGCAATTTATATATGACGAAGATGAGTACCAGGATGTTTTTGTGTCAGAAGCCAACTTCCTTGCTCGTGAAGC
AAATCAATGGTATCAACAACCTGCTTCAACAACTTGTAGCTCTCCACCCGAATTTTCCCGGTCTGTTGAGTGA
AA sequence
>Potri.001G225100.2 pacid=42789693 polypeptide=Potri.001G225100.2.p locus=Potri.001G225100 ID=Potri.001G225100.2.v4.1 annot-version=v4.1
MASSHLLCNTFPIQTSCNLSSKSNISSFKPSGSFSFCQKLQFQRTPVVKATRKQVELVYDPDGRVNKLADEVDKQAPLSRLTLFSPCKVNVFLRITSKRE
DGYHDLASLFHVISLGDVIKFSLSPSKRIDRLSTNVSGVPLTEDNLIIKALNLYRKKTGTDNFFWIHLDKKVPTGAGLGGGSSNAATALWAANQFSGCLA
TEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEIVQDIPSPVSSGIPMVLMKPPQSCSTAEVYKCFQLDKTSQADPLTLLEKISRNGISQDVCINDLEPPA
FEVLPSLKRLKQRIAAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDEDEYQDVFVSEANFLAREANQWYQQPASTTCSSPPEFSRSVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Potri.001G225100
[exp]
0 1
AT4G04330 AtRbcX1 homologue of cyanobacterial Rb... Potri.011G010300
[exp]
9.16 0.9426
AT3G12930 Lojap-related protein (.1) Potri.001G458600
[exp]
11.40 0.9180
AT4G21500 unknown protein Potri.004G034200
[exp]
11.74 0.9225
AT1G07700 Thioredoxin superfamily protei... Potri.014G029200
[exp]
16.24 0.9264
AT5G38290 Peptidyl-tRNA hydrolase family... Potri.004G098100
[exp]
16.73 0.9249
AT3G18870 Mitochondrial transcription te... Potri.004G150600
[exp]
18.81 0.9280
AT3G17668 ENA ENHANCER OF ATNSI ACTIVITY, Dn... Potri.014G179800
[exp]
21.00 0.9076
AT1G32580 plastid developmental protein ... Potri.010G068300
[exp]
27.74 0.9248
AT4G29400 Protein of unknown function (D... Potri.014G148300
[exp]
28.14 0.9210
Potri.013G101050
[exp]
31.60 0.9026

Potri.001G225100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.