Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26920 425 / 9e-141 Ubiquitin-associated/translation elongation factor EF1B protein (.1) AT5G12120 389 / 3e-127 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G021900 [exp] 931 / 0 AT2G26920 412 / 3e-135 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.001G033600 [exp] 356 / 4e-114 AT2G26920 267 / 2e-80 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.003G191600 [exp] 348 / 8e-111 AT2G26920 275 / 3e-83 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026781 [exp] 663 / 0 AT2G26920 468 / 3e-157 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10036096 [exp] 591 / 0 AT2G26920 473 / 6e-159 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10041640 [exp] 191 / 3e-53 AT2G26920 179 / 3e-49 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10024080 [exp] 188 / 4e-52 AT2G26920 181 / 3e-50 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G225200.1 pacid=42792051 polypeptide=Potri.001G225200.1.p locus=Potri.001G225200 ID=Potri.001G225200.1.v4.1 annot-version=v4.1 ATGTCTCCAGCTTCAAAATCAAAGTCAAAGGACAAAAAGGCTGGCAAGGAACCCCAGAAGGCTTCATCAAAGCCTTCGGGACCTGCTAATGCAGGAAGTG GTATCTCAGCTAGTGCATACAATCCACTGTCTGGAACATTTCATACCATTGAAACAGTGCCGACATCCTCTGCTTCACCTCTACACAATAATAGTCGTTT CCGAAACATTGACGAGACAGATGATCATCTTGGAGGCTCGCTTGGAGCTGGGGTTGAGTATGATTCTGTTTCGAATAATGGTAGCTGGTCTGGCGAGTCA GAAGATCATAAAGAGAAGACATCTAATCATCCAGTCCGGCAAGAAACAATACCAGGCACTGAAAATGATAAGCGGGAAAAAATCCGCCAGAAGAATGAGA AAAAGCATCAGCGTCAAAAGGAGAGGCGAGCACATGAGTTGCATGAGCGGTGCACTGGCTATCTTATGTCGAGAAAGCTGGAAGCACTAGCTCAACAGCT TGTTGCAATGGGATTTTTGCATGAACGGGCAACAATGGCTCTTATATTGAATGAAGGCAAGTTAGAAGAATCTGTAACATGGTTGTTTGAAGAGGGTGAA CATGCAGATAAGCACAGAGATCAAAACCTTGGTGGGGGTACTTTGAAAATTGATATATCAGAAGAGCTTGCTCGGATTGTAGAAATGGAAATCAGATATA AGTGCACAAAGCAGGAGGTTGAAAGAGCTGTGGTTGCCTCTGAAGGTGATCTTGAGAAGGCAGTAGAAAGTTTAAGACAACTGAAGCTAGATCCACCTTC TTCTCCTCCAAAACCTGATGAAAATGGTGATCCTCCAACGTCAAGTAATGATAAGCATTCTTTAGCAGGTAGCCAGAATATGGTGAGACCACAACCAAAG CTCAACCCAACTTCCATGATACAGCAAAGAAGAGATGATAAAGATTTTAACTATACAAAAGCTGCTGTTCTGGTGGCAGGATCTTTGGAATCAGGTAGTA AAAATGTGCAGTCCTTGAAGAGAATACAACCGAAGTCGGAGTGGCCAAGACCTCAGCCAACTCCTACTCCAACTGACAAGAGATGGTCAAGTGTGGGATC AAATCCTTCTGTCTCTCACTCTTTGGCATCTCCTTTGCATGGGCCACCTCCACCTGCCAAGACAGAAACCAGTTATGTTGCTGTTGGAAGTGAATACAAG AGCCTTCAGCCTGGAACTATTAGAGAACCGGTTATTATGATGCAGCGGCCTCATTCTGTAAATTCAAAGCAGGTTCCAACTGCAAGCATAAGCTCATCTC CTCCTGGAACAGCCACTGGTTGGTATCCCACCAATAGTGCTGATATCATGAAGTCAAATGGCTTGATGCCACACATTCCTAGCACAAGAAGCCCCAGCCC AAACATTCCGAGTTCGAATCAGATGTTCCACCAATTTCATTATCAACAACCGCAGTATTTTGTCCCCAGCAGTGGCCCAGGGGATTCTCCTGGAACCAGC AAAGTAAATGGCTTATGGAGTAGAGCTGGTGCATCGCCATCACTTGCTGCTGCTTCTTCCCTTGGACTTTTCTCTGGTTTGGGCTCAACAGGTTCATCAG GGGCAACCTCTCCAGTTGATTGGAGCACTTCCGGGTCAATGGAGCAGTTAGATTACACCAGCATAGACTGGAGTTTGAATCGAGGTTTATCTTCCCCAAG GCCTGGTGGATTGTGGTTAGGACCAAGTTTAAAGAGCAGTGCTCAAGCGTATGTTTCCACCGGCGCTTCTGGCTTTGGTGCTAGATTGGCAATGAGAGCA GCTCCCAGCAGCAATGGCATACCGATTCCGGGATTGCGGGATGGTGGTGTGGCTAATTCAGAAACATCCACCTCCGGTTCCCATGAATGGACCTCTCCAT TTGAAGGGAATGATATCTTTGGCTTGTCAAGACAGTTTGTTTCATCTCCTTCGCTGTAG
AA sequence Show only first row Show all	>Potri.001G225200.1 pacid=42792051 polypeptide=Potri.001G225200.1.p locus=Potri.001G225200 ID=Potri.001G225200.1.v4.1 annot-version=v4.1 MSPASKSKSKDKKAGKEPQKASSKPSGPANAGSGISASAYNPLSGTFHTIETVPTSSASPLHNNSRFRNIDETDDHLGGSLGAGVEYDSVSNNGSWSGES EDHKEKTSNHPVRQETIPGTENDKREKIRQKNEKKHQRQKERRAHELHERCTGYLMSRKLEALAQQLVAMGFLHERATMALILNEGKLEESVTWLFEEGE HADKHRDQNLGGGTLKIDISEELARIVEMEIRYKCTKQEVERAVVASEGDLEKAVESLRQLKLDPPSSPPKPDENGDPPTSSNDKHSLAGSQNMVRPQPK LNPTSMIQQRRDDKDFNYTKAAVLVAGSLESGSKNVQSLKRIQPKSEWPRPQPTPTPTDKRWSSVGSNPSVSHSLASPLHGPPPPAKTETSYVAVGSEYK SLQPGTIREPVIMMQRPHSVNSKQVPTASISSSPPGTATGWYPTNSADIMKSNGLMPHIPSTRSPSPNIPSSNQMFHQFHYQQPQYFVPSSGPGDSPGTS KVNGLWSRAGASPSLAAASSLGLFSGLGSTGSSGATSPVDWSTSGSMEQLDYTSIDWSLNRGLSSPRPGGLWLGPSLKSSAQAYVSTGASGFGARLAMRA APSSNGIPIPGLRDGGVANSETSTSGSHEWTSPFEGNDIFGLSRQFVSSPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26920			Ubiquitin-associated/translati...		Potri.001G225200 [exp]	0	1
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	2.23	0.6930
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	3.74	0.6805
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.012G085600 [exp]	7.48	0.6678
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	12.72	0.6483
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	14.49	0.6591
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	14.96	0.6181
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	18.43	0.6254
AT4G32610			copper ion binding (.1)		Potri.006G246300 [exp]	22.91	0.6145
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.006G208600 [exp]	23.49	0.5593
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	32.84	0.6194

Compare expression of checked genes

Potri.001G225200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.