Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SYN3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59550 402 / 1e-129 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G16270 168 / 8e-43 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT5G40840 122 / 1e-28 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G05490 94 / 1e-19 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT4G05360 79 / 6e-15 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178600 [exp] 170 / 2e-43 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 168 / 9e-43 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.017G067400 [exp] 117 / 7e-27 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.008G072300 [exp] 52 / 1e-06 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037478 [exp] 380 / 1e-120 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10023028 [exp] 378 / 7e-120 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10026862 [exp] 164 / 1e-41 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 144 / 5e-35 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10041587 [exp] 113 / 2e-25 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10022338 [exp] 110 / 1e-24 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10020233 [exp] 107 / 8e-24 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10014204 [exp] 50 / 5e-06 AT5G05490 314 / 3e-98 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0157 [poplar] [flax] Kleisin PF04824 [poplar] [flax] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein CL0157 [poplar] [flax] PF04825 [poplar] [flax] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Potri.001G225600.2 pacid=42791285 polypeptide=Potri.001G225600.2.p locus=Potri.001G225600 ID=Potri.001G225600.2.v4.1 annot-version=v4.1 ATGTTTTATTCGCAGACGTTCTTAGCAAGGAAGGGTCCTTTAGGGACTGTTTGGTGCGCTGCTCATCTTCAACACAGGCTCAAGAAATCTCACTATACCT CCACTGATATCCCCTCCACTGTCGATCGAATTATGTTCCCGGAAGTTCCGATTGCGTTGAGAATGTCAAGCCACCTTTTGCTAGGTGTTGTTCGGATATA TAAAAAGAAAGTTGATTACCTTTTCCAAGATTGTACTGTTGCTCTTGCTGGGCTAAACAAGGCTTTCACAACTACAGAAGTTAATTTGCCAGAGAACGCC ACAACAGCAACATTCGAGTCTATCACTTTGCCACCAACCCTCAACCTTGATGGCTTTGACATGAGTGATTACTTAGATCCCGAAGGGTCCCCGGATAATC ATCTCAAGAGTTACGAGGAAATCACGATACCAGATCAAATTTCTCCTTACATCACCATACATGTCGATGAGGATAATATCTGTCCATCAGTTCCAGAACA GGATCCTAGTTCAGAGGCTAGACCAGTGGATGATATCCATCCACCACCTCCAGTCAATGGTGACTTGCCTTCTCAAGATACAGGTCAAAGGACTCAGACA GTTGTGAATAACGAGACTGGACCTGGTGCAAGTAATCAGACAGATGTGCTTGTGGACGATATGGATTTTCATGATCCTGGTCAAAGTAATCAACCAGAAG ACCCAATGGATACTGAGGATTTTCGAGATCCTGCTCCAAGTAATCAGACAGAAGTTCTAATGCACACTGGGGATTTTCAGGATCCTGGTCCAAGTAATCA GACATCAGTACCTACTGAGACTCTTAACCAAAGTCTTAGTGGGGAAAATTCCCCTCCAGAAATTGAAGTTATGCGTGATGCTGCCACTGATTTGGGCTCA GAAAGCTTTCCTCCATTGAGTCCAACTAGAAAGGATGATGCAGCTGAACCAAATAGATCTTTAGACGAAGTTCTAAATGAGAAGGATTTCCTTTCTCCAA TAATGGAAGATGCTTTACCTTCTCTAGAGAAGTCTTTACCATTTCAGCAGCATTCAAAAGCACCTACTTCTGCTGCTTCACAAGATATTCCTGATGTTTT TGACACACATGGTTCATTTGGGAATATATCACCTCAATTTGCCATTCGTTCAACTCCACCTGTTCAGCAGCCACAACCAGGGCCTCCACCTGCTCAGCAG CCACGGCCAAGGAGGAGGAGGAGGATGCAATTTGATGAGGCCACAGTGTTGACTAATAGGTTTATGAGGAGGGCACTTGAGGATCCTAGTGATCTGATGC GACAGAAGAGGACGAGGTCATCCTCTATGGTGGGTATATGGAGGTTGAACAATAGTTTGAGAAAGGAACAAATCTTTTATGAGCCTTTGATAACTGGGTC TTGTGAAGATTTATGCAAGCTTTCTGAGAAGGATTATATTACTACAAAACCTCATTTGACTCTTGAACAGGGAGATATTTCAGAGCATGGGGTTACAACA TCTCCTGGCCCTGAAACTGAAGCCATCCCTGAGCCTAGGATGGCAAGCTCTCCTGCTCCCACAGCTGAACCCATCTCAGAGCCTATGATTGCACAATCTC CTGTTCCAGGACGTCAATCTGGCATGGAAAAGGAGCGACCCCAACAGGATCTAGGCTGTTATGACCACAGTGTTTTACCTGAAATTGATATGGAAATCGA ACGACTTCGAAATGATGGAGGTCATGATGGCAATGACTTTTTATCAGACCTGCCTTCTCCAGCAATGTCCATGCCTTCTCCAGGAAGATTCATGCCTTCT TCTCTTAGAAGAGATGACTTCACTCCCATGCCAATAAGCAGCTTTGGATCAGGAACAGTACCCCAGGAAGGAACATCGACAACTGTGCACACTCCAGAAT TTTCAGCTTCCCCTGGAACTTATCAGTTAGGTGAACAGAACACTGGGCTCTCTGATATTCCTGAATTGATGAAGACTGCAGAAGATGATGACCTTGCTAA AATACTAGAAGCAGACAACACACCAGTTGGATCCCTAGGTACTCGAGACATTGATTCATTGTCTGTGAGGACAAGGGGTGTGGCTAAATATTTAAAAGAA CATTCTCCTATTATCCCATTGTCAGAAGAGTCATCTGGAGATATCAGTCTCACCAGTATCTTACAAGGAAAAACGAGAAAGTTATGTGCTCGGATGTTCT TTGAAACAATGGTTTTGAAGAGCTATGGGCTTATTGATCTACAACAGGAGGAACCTTATGGTGACATTGCTTTGAAGTTGACTTCAACGCTATCAAAGGC CCAATTATGA
AA sequence Show only first row Show all	>Potri.001G225600.2 pacid=42791285 polypeptide=Potri.001G225600.2.p locus=Potri.001G225600 ID=Potri.001G225600.2.v4.1 annot-version=v4.1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDIPSTVDRIMFPEVPIALRMSSHLLLGVVRIYKKKVDYLFQDCTVALAGLNKAFTTTEVNLPENA TTATFESITLPPTLNLDGFDMSDYLDPEGSPDNHLKSYEEITIPDQISPYITIHVDEDNICPSVPEQDPSSEARPVDDIHPPPPVNGDLPSQDTGQRTQT VVNNETGPGASNQTDVLVDDMDFHDPGQSNQPEDPMDTEDFRDPAPSNQTEVLMHTGDFQDPGPSNQTSVPTETLNQSLSGENSPPEIEVMRDAATDLGS ESFPPLSPTRKDDAAEPNRSLDEVLNEKDFLSPIMEDALPSLEKSLPFQQHSKAPTSAASQDIPDVFDTHGSFGNISPQFAIRSTPPVQQPQPGPPPAQQ PRPRRRRRMQFDEATVLTNRFMRRALEDPSDLMRQKRTRSSSMVGIWRLNNSLRKEQIFYEPLITGSCEDLCKLSEKDYITTKPHLTLEQGDISEHGVTT SPGPETEAIPEPRMASSPAPTAEPISEPMIAQSPVPGRQSGMEKERPQQDLGCYDHSVLPEIDMEIERLRNDGGHDGNDFLSDLPSPAMSMPSPGRFMPS SLRRDDFTPMPISSFGSGTVPQEGTSTTVHTPEFSASPGTYQLGEQNTGLSDIPELMKTAEDDDLAKILEADNTPVGSLGTRDIDSLSVRTRGVAKYLKE HSPIIPLSEESSGDISLTSILQGKTRKLCARMFFETMVLKSYGLIDLQQEEPYGDIALKLTSTLSKAQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	0	1	SYN3.1
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	1.00	0.9640
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	2.44	0.9569
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	3.46	0.9469
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	4.47	0.9448
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	4.89	0.9494
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	5.91	0.9345
AT3G55490			GINS complex protein (.1)		Potri.010G189200 [exp]	6.92	0.9227	Pt-TTN10.2
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	7.41	0.9239
AT2G37960			unknown protein		Potri.006G094600 [exp]	8.00	0.9296
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	8.12	0.9354

Compare expression of checked genes

Potri.001G225600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.