Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 310 / 2e-102 BGLU32 beta glucosidase 32 (.1) AT2G44480 300 / 7e-99 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 296 / 1e-97 BGLU12 beta glucosidase 12 (.1) AT2G44450 295 / 7e-97 BGLU15 beta glucosidase 15 (.1) AT2G25630 293 / 1e-96 BGLU14 beta glucosidase 14 (.1) AT5G44640 293 / 2e-96 BGLU13 beta glucosidase 13 (.1) AT3G60130 291 / 1e-95 BGLU16 beta glucosidase 16 (.1.2.3) AT2G44470 288 / 1e-95 BGLU29 beta glucosidase 29 (.1.2.3) AT3G60140 291 / 1e-94 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT3G03640 289 / 1e-94 BGLU25, GLUC beta glucosidase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225808 [exp] 419 / 3e-145 AT3G60130 475 / 1e-163 beta glucosidase 16 (.1.2.3) Potri.001G226100 [exp] 419 / 4e-145 AT3G60130 476 / 6e-164 beta glucosidase 16 (.1.2.3) Potri.005G059500 [exp] 328 / 1e-109 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.004G040700 [exp] 313 / 5e-104 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 306 / 3e-101 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.002G219600 [exp] 306 / 3e-101 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.003G211100 [exp] 305 / 4e-101 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223500 [exp] 304 / 2e-100 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 301 / 2e-100 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026057 [exp] 307 / 1e-101 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 306 / 2e-101 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 303 / 4e-100 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 302 / 1e-99 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 301 / 2e-99 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 299 / 1e-98 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 293 / 6e-96 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10012687 [exp] 291 / 4e-95 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10024065 [exp] 290 / 6e-95 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10022883 [exp] 288 / 3e-94 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G225812.1 pacid=42788936 polypeptide=Potri.001G225812.1.p locus=Potri.001G225812 ID=Potri.001G225812.1.v4.1 annot-version=v4.1 ATGGCAATTCATCTTGGCTGGATTTTTTCAGGAATGCTCCTCCTAGTAAGCTCGTTTGCTTCTGCCAAGCTACTGATGCCAAACAACATTATGGACTTAA ATGTTCCTTTTGCCACTAATTCTTTCAACCGTAAATCCTTTCCAAGTGATTTCATATTTGGGACAGCCTCGTCTTCTTACCAGTACGAGGGTGATGCAAA CGAAAGTTGCAGAGGTCGGAGCATATGGGACACTTTTACTCAAGAATTCCCAGAAAGAATAGCTGATGGCAGCAACGGAGAGATGGGAATTGATTTTTAC CATCGCTACCAGAGTGATCTTCAGACAGTGAAGGACATGAATATGGATTCTTTCAGATTCTCTATCTCTTGGTCGAGAGTAATTCCCAGTGGGAAAATAA GGGCAGGAGTGAACAGAGATGGAATTGAGTTTTACAACAAGCTCATCAATGCCACCATAGCTAAAGGTTTACAGCCTTTTGTAACTATCTTTCATTGGGA TACTCCTCAAGCACTCGAAGACATGTACGGCGGCTTTCTAAGTGATAATATTGTGAACGATTTTCGAGATTTTGCTGAGCTTTGCTTCCAGGAATTTGGT GACCGAGTGAAGTACTGGATTACTATAAATGAGCCACACAAATACTCCAGTGACGGCTATGATTCAGGTCAATTTGCACCTGGCAGATGTTCCAAATGGG TGGATGAAAAGTACTGCAAACATGGAAACTCTGCCACGGAACCTTACCTAGTTGCCCATAATCTCCTCCTTTCTCATGTAGCAGCAGCAGATACATACAA GAAAAGGTATCAGGTATCCACTAAATGCACATTTTTAATGGATAAACTATTATTTAATCCCTATGATATTAGCGAAATAATTAGTCTATCCCTTGTGTTT AAGGCATAA
AA sequence Show only first row Show all	>Potri.001G225812.1 pacid=42788936 polypeptide=Potri.001G225812.1.p locus=Potri.001G225812 ID=Potri.001G225812.1.v4.1 annot-version=v4.1 MAIHLGWIFSGMLLLVSSFASAKLLMPNNIMDLNVPFATNSFNRKSFPSDFIFGTASSSYQYEGDANESCRGRSIWDTFTQEFPERIADGSNGEMGIDFY HRYQSDLQTVKDMNMDSFRFSISWSRVIPSGKIRAGVNRDGIEFYNKLINATIAKGLQPFVTIFHWDTPQALEDMYGGFLSDNIVNDFRDFAELCFQEFG DRVKYWITINEPHKYSSDGYDSGQFAPGRCSKWVDEKYCKHGNSATEPYLVAHNLLLSHVAAADTYKKRYQVSTKCTFLMDKLLFNPYDISEIISLSLVF KA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Potri.001G225812 [exp]	0	1
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226200 [exp]	2.44	0.9354	Pt-PLIN-GEN.19
AT2G01050			zinc ion binding;nucleic acid ...		Potri.003G047101 [exp]	4.24	0.8199
AT5G46600			Aluminium activated malate tra...		Potri.002G054300 [exp]	5.47	0.8057
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Potri.015G100102 [exp]	8.48	0.8412
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213300 [exp]	10.00	0.7777
AT3G30387			Protein of unknown function (D...		Potri.017G029250 [exp]	11.31	0.8142
AT2G15220			Plant basic secretory protein ...		Potri.001G299500 [exp]	12.40	0.8007
AT3G57810			Cysteine proteinases superfami...		Potri.010G057750 [exp]	15.87	0.7967
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050500 [exp]	17.66	0.8027
					Potri.005G023301 [exp]	18.16	0.8007

Compare expression of checked genes

Potri.001G225812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.