Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60130 475 / 8e-164 BGLU16 beta glucosidase 16 (.1.2.3) AT2G44480 474 / 2e-163 BGLU17 beta glucosidase 17 (.1.2) AT5G44640 467 / 9e-161 BGLU13 beta glucosidase 13 (.1) AT5G54570 468 / 1e-160 BGLU41 beta glucosidase 41 (.1) AT2G44450 466 / 2e-160 BGLU15 beta glucosidase 15 (.1) AT5G24550 464 / 3e-159 BGLU32 beta glucosidase 32 (.1) AT5G42260 461 / 3e-158 BGLU12 beta glucosidase 12 (.1) AT3G60140 462 / 9e-158 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT1G26560 454 / 1e-155 BGLU40 beta glucosidase 40 (.1) AT2G44490 451 / 7e-154 BGLU26, PEN2 PENETRATION 2, BETA GLUCOSIDASE 26, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225808 [exp] 1060 / 0 AT3G60130 475 / 1e-163 beta glucosidase 16 (.1.2.3) Potri.005G059500 [exp] 581 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G222800 [exp] 535 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 534 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223500 [exp] 532 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223700 [exp] 530 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223716 [exp] 530 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223720 [exp] 530 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 530 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031808 [exp] 501 / 6e-174 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 501 / 8e-174 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 496 / 4e-172 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10026057 [exp] 491 / 6e-170 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 488 / 8e-169 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10012687 [exp] 487 / 5e-168 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 483 / 6e-167 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 483 / 6e-167 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10024152 [exp] 484 / 2e-166 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10030577 [exp] 478 / 2e-164 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G226100.1 pacid=42791954 polypeptide=Potri.001G226100.1.p locus=Potri.001G226100 ID=Potri.001G226100.1.v4.1 annot-version=v4.1 ATGGCTATTCCTACTGGCTTGCTTTTATTAGGAATGCTCTTCCTAATGTTCTCGTTTGCTTCTGCTCAGATAGAGATGCCAAGAGGTATCACTGAGGACT TTGATACGACTTGTATCACTGATCTTAAATTCGGGTTATCTCGTAAATCCTTTCCGGGGGATTTCATATTCGGGGCAGCGGCATCCGCTTACCAGACCGA GGGTCATGCAAACAAAAGTTGCAGAGGTCCGAGTATATGGGACACTTTTACTCAAGATTTCCCAGAAAGGATAGCTGATGGCTGCAACGGAGACTTGGGA ATTGATTTGTACAATCGCTACGAGAGTGATCTTGAAGAAATGAAGGATATGAATATGGATGCTTTCAGATTCTCGATCTCCTGGTCCAGAGTAATTCCCA GTGGGAAAATAAGGGCAGGAGTGAACAAAGATGGAATTGAGTTTTACAACAAGCTAATCGATGCAACCATAGCTAAAGGTTTACAGCCCTATGCAACTCT CTTTCATTGGGATGTTCCTCAAGCACTTGAAGACAAGTACGGTGGCTTTCTCAGTGATAATATTGTGAGCGACTTCCGAGATTTTGCTGAGCTTTGCTTC AAGGAATTTGGTGACCGAGTGAAGTACTGGATTACTTTGAATGAGCCACAAAAGTTCACCGGTGATGGCTACGATTCAGGTCACTTTGCACCGGGCCGAT GTTCCAAGTGGGTGGATGAAAAGTACTGCATAAATGGGAACTCTTCCACCGAGCCTTACATAGTTGCCCATAATCTCCTCCTTTCCCATGCAGCAGCAGT ACATACATACTGGGAAAAGTATCAGGCATCTCAAAATGGGAAGATTGGGGTAACACTCAATGCCCGCTGGTTTGAACCGTACTCTAACAGTACAGAAGAT CGTAATGCTGCCAAAAGATCTCTTGATTTCATGCTTGGTTGGTTCCTGAACCCTATAACATATGGTGACTATCCGAGCAGCATGCGGGAATTAGTCAATG ATAGGCTACCAACATTCTCTCCACTGGATTCTATAAATCTCAAAGGATCGTTGGACTTTGTTGGATTGAATTACTATACTGCATATTATGCAGCAAATGC GAATTCTTCTAGTCCAGACCCTCGTAGATATCAAACAGATTCTAATTGCATTATTACAGGAGAACGAGATGGCAAACCCATCGGTCCACAGGCTGGTGTA TCATGGCAGTATATCTATCCAGAGGGGTTGCAGTATATGTTGAATCACATCAAAGATACATACAATAATCCAGTAATTTACATCACTGAAAATGGCTACG GTGAAGTCGTTAAGACAGATGTACAACTACATCATGGAACCGTGATGGATCTTCCAAGGGTAGAATATCATTGTACTCATCTTAGGAATGTTGTAGCGTC TATCAAAAATCATGGAGTTCAAGTCAAAGGTTATTTTGTATGGTCCTTTGCCGACAATTTCGAATTTACAGATGGATATACCATAGGATTCGGTTTGTTG TACGTAAACCGTACGTCTAATTTCACAAGAATTGCGAAGCTCTCATCACATTGGTTTACAGAATTCCTTGGGGACCAACCGGCTAATCCAGTACCATTAT ATTTCAAGCGATTGAATATAGCTTGA
AA sequence Show only first row Show all	>Potri.001G226100.1 pacid=42791954 polypeptide=Potri.001G226100.1.p locus=Potri.001G226100 ID=Potri.001G226100.1.v4.1 annot-version=v4.1 MAIPTGLLLLGMLFLMFSFASAQIEMPRGITEDFDTTCITDLKFGLSRKSFPGDFIFGAAASAYQTEGHANKSCRGPSIWDTFTQDFPERIADGCNGDLG IDLYNRYESDLEEMKDMNMDAFRFSISWSRVIPSGKIRAGVNKDGIEFYNKLIDATIAKGLQPYATLFHWDVPQALEDKYGGFLSDNIVSDFRDFAELCF KEFGDRVKYWITLNEPQKFTGDGYDSGHFAPGRCSKWVDEKYCINGNSSTEPYIVAHNLLLSHAAAVHTYWEKYQASQNGKIGVTLNARWFEPYSNSTED RNAAKRSLDFMLGWFLNPITYGDYPSSMRELVNDRLPTFSPLDSINLKGSLDFVGLNYYTAYYAANANSSSPDPRRYQTDSNCIITGERDGKPIGPQAGV SWQYIYPEGLQYMLNHIKDTYNNPVIYITENGYGEVVKTDVQLHHGTVMDLPRVEYHCTHLRNVVASIKNHGVQVKGYFVWSFADNFEFTDGYTIGFGLL YVNRTSNFTRIAKLSSHWFTEFLGDQPANPVPLYFKRLNIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226100 [exp]	0	1
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G225808 [exp]	7.48	0.9973
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.006G256100 [exp]	11.22	0.9948
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Potri.006G142600 [exp]	13.41	0.9947
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024600 [exp]	14.49	0.9947
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G164800 [exp]	16.06	0.9947
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.011G047700 [exp]	16.34	0.9107
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.009G129900 [exp]	18.33	0.9945	PRP4.4
AT4G00165			Bifunctional inhibitor/lipid-t...		Potri.014G059800 [exp]	19.89	0.9945
					Potri.007G113350 [exp]	20.49	0.9944
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.016G062700 [exp]	22.00	0.9942

Compare expression of checked genes

Potri.001G226100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.