Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PLIN-GEN.19
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60130 302 / 1e-99 BGLU16 beta glucosidase 16 (.1.2.3) AT2G44480 298 / 7e-99 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 299 / 1e-97 BGLU15 beta glucosidase 15 (.1) AT1G26560 298 / 1e-97 BGLU40 beta glucosidase 40 (.1) AT5G24550 298 / 2e-97 BGLU32 beta glucosidase 32 (.1) AT5G44640 297 / 3e-97 BGLU13 beta glucosidase 13 (.1) AT1G47600 295 / 2e-96 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT5G42260 291 / 1e-94 BGLU12 beta glucosidase 12 (.1) AT5G54570 291 / 1e-94 BGLU41 beta glucosidase 41 (.1) AT1G51470 290 / 2e-94 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G226100 [exp] 515 / 0 AT3G60130 476 / 6e-164 beta glucosidase 16 (.1.2.3) Potri.001G225808 [exp] 513 / 0 AT3G60130 475 / 1e-163 beta glucosidase 16 (.1.2.3) Potri.005G059500 [exp] 403 / 4e-138 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G222800 [exp] 352 / 2e-118 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223500 [exp] 350 / 1e-117 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 347 / 1e-116 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223720 [exp] 347 / 2e-116 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223716 [exp] 346 / 5e-116 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223700 [exp] 346 / 5e-116 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024152 [exp] 333 / 1e-110 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10012687 [exp] 332 / 2e-110 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 331 / 3e-110 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 328 / 6e-109 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 325 / 8e-108 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10030577 [exp] 326 / 1e-107 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10026057 [exp] 323 / 3e-107 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10039513 [exp] 323 / 2e-106 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10031235 [exp] 322 / 2e-106 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10039541 [exp] 320 / 9e-106 AT2G44480 400 / 6e-135 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G226200.2 pacid=42793723 polypeptide=Potri.001G226104.1.p locus=Potri.001G226200 ID=Potri.001G226200.2.v4.1 annot-version=v4.1 ATGTACGGCGGCTTTCTAAGTGATAATATTGTGAACGATTTTCGAGATTTTGCTGAGCTTTGCTTCCAGGAATTTGGTGACCGAGTGAAGTACTGGATTA CTATAAATGAGCCACACAAATACTCCAGTGACGGCTATGATTCAGGTCAATTTGCACCTGGCAGATGTTCCAAATGGGTGGATGAAAAGTACTGCAAACA TGGAAACTCTGCCACGGAACCTTACCTAGTTGCCCATAATCTCCTCCTTTCTCATGTAGCAGCAGCAGATACATACAAGAAAAGGTATCAGGCTTCTCAA AATGGGATGATTGGGATAACACTCAATGCTCGTTGGTATGAACCATACTCTAACAGTACAGAAGATTATGAAGCTGCAAAAAGAACTCTTGATTTCATGC TTGGTTGGTTCATGAACCCTTTGACATATGGTGACTATCCAAGCAACATGCGGGAATTGGTTCAAGATAGATTACCAAAATTCTCTCCACTGGATTCTAT TTTTCTCAAAGGATCATTAGACTTTGTTGGATTAAATTACTATACTGCATATTATGCAGCAAATGCCAATTCTTCCGATCCAGATCATCGCAGATATCAA ACAGATTGTAATTCCAACATTACAGGAGAACGAAATGGGATCCTCATCGGTCCAAAGGCTGGTGCGCCATGGCAGTATATCTATCCAGAGGGGATACGAT ATCTTTTGAATCACATAAAAGACAAATACCAAAATCCAATAATTTACATAACTGAGAATGGGTACAGTGACTTCCTTGGTGCTGATGTATCAGAAGCGAA AGTCTTGGATGATCATCCTAGAATAGAATTCCATTTTAACCATCTTCGGAATGTTCTACAATCTATCAAAGACCATGGAGTTCAAGTCAAAGGCTACTTT GCATGGTCTTTCGCCGACGACTTCGAATTTATAGATGGATTTACCATAGGATTTGGTTTGGTGCAAGTAAACCGTTCATCTGGTTTCTCAAGAAAGGGGA AGCGCTCAGCATCCTGGTTTTCGGAATTCCTTGCGGACAAATGGGCTGATCCAAAGGTATAA
AA sequence Show only first row Show all	>Potri.001G226200.2 pacid=42793723 polypeptide=Potri.001G226104.1.p locus=Potri.001G226200 ID=Potri.001G226200.2.v4.1 annot-version=v4.1 MYGGFLSDNIVNDFRDFAELCFQEFGDRVKYWITINEPHKYSSDGYDSGQFAPGRCSKWVDEKYCKHGNSATEPYLVAHNLLLSHVAAADTYKKRYQASQ NGMIGITLNARWYEPYSNSTEDYEAAKRTLDFMLGWFMNPLTYGDYPSNMRELVQDRLPKFSPLDSIFLKGSLDFVGLNYYTAYYAANANSSDPDHRRYQ TDCNSNITGERNGILIGPKAGAPWQYIYPEGIRYLLNHIKDKYQNPIIYITENGYSDFLGADVSEAKVLDDHPRIEFHFNHLRNVLQSIKDHGVQVKGYF AWSFADDFEFIDGFTIGFGLVQVNRSSGFSRKGKRSASWFSEFLADKWADPKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226200 [exp]	0	1	Pt-PLIN-GEN.19
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Potri.001G225812 [exp]	2.44	0.9354
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Potri.015G100102 [exp]	2.82	0.9311
AT2G31335			unknown protein		Potri.019G012400 [exp]	3.16	0.9208
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.001G205200 [exp]	3.74	0.9008	Pt-PIN2.1,PIN10
AT2G15220			Plant basic secretory protein ...		Potri.001G299500 [exp]	4.24	0.8864
					Potri.001G306932 [exp]	5.47	0.8860
AT5G05960			Bifunctional inhibitor/lipid-t...		Potri.010G196300 [exp]	5.47	0.9101
AT5G01750			Protein of unknown function (D...		Potri.016G130400 [exp]	6.24	0.8582
AT5G46600			Aluminium activated malate tra...		Potri.002G054300 [exp]	6.63	0.8278
AT3G57810			Cysteine proteinases superfami...		Potri.010G057750 [exp]	6.92	0.8489

Compare expression of checked genes

Potri.001G226200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.