Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27350 104 / 5e-27 SFP1 Major facilitator superfamily protein (.1) AT5G27360 97 / 2e-24 SFP2 Major facilitator superfamily protein (.1) AT2G48020 96 / 5e-24 Major facilitator superfamily protein (.1.2) AT1G54730 91 / 2e-22 Major facilitator superfamily protein (.1.2.3) AT1G08890 89 / 1e-21 Major facilitator superfamily protein (.1) AT1G08930 89 / 1e-21 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G20460 87 / 6e-21 Major facilitator superfamily protein (.1) AT3G05160 87 / 7e-21 Major facilitator superfamily protein (.1.2) AT3G05400 86 / 1e-20 Major facilitator superfamily protein (.1.2) AT3G05165 86 / 3e-20 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027800 [exp] 214 / 1e-68 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.005G037000 [exp] 114 / 1e-30 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 112 / 9e-30 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 111 / 1e-29 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 100 / 2e-25 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 93 / 7e-23 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.014G136600 [exp] 90 / 9e-22 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 90 / 9e-22 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 86 / 2e-20 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033812 [exp] 120 / 7e-33 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 99 / 8e-25 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029966 [exp] 95 / 2e-23 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029965 [exp] 94 / 2e-23 AT4G04750 283 / 2e-92 Major facilitator superfamily protein (.1) Lus10033814 [exp] 94 / 5e-23 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Lus10002258 [exp] 91 / 4e-22 AT1G54730 319 / 2e-101 Major facilitator superfamily protein (.1.2.3) Lus10000924 [exp] 90 / 1e-21 AT4G04750 371 / 1e-124 Major facilitator superfamily protein (.1) Lus10008183 [exp] 89 / 2e-21 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 88 / 4e-21 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 87 / 9e-21 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.001G226600.2 pacid=42788484 polypeptide=Potri.001G226600.2.p locus=Potri.001G226600 ID=Potri.001G226600.2.v4.1 annot-version=v4.1 ATGAACTGTTCTGGCCTCTTGGTAGTTTTTTTCCTTGGAAACTTTTTTTCATGGCGCACCGTGTCTCTATTAGCTATAATTCCATGTTTAATGCAAGTTG TCGGTTTAGTCTTCATACCAGAGTCTCCAAGATGGCTAGCATCAATTGGCAAGGAAATAGAGTTTGAAGATGCTTTGCGACGGCTTAGAGGAGTGGATGC CGGTTTTTCTCAAGAAGCTATTGAAATCAAAGATGCTACAGAGAATTTCCAACGCAGTGAAGCTGGATTTCAAGGCTTGTTTCAAAAGAAATATGCTTAT CCAGTTATGATTGGAGTAGGGTTAATGTTACTTCAACAATTGGGAGGGAACAGTGTGTTTGCAGCTTATCTTAGCACAGTGTTTGCTAAAGCTAGTAAGT CTCTCTCTTAA
AA sequence Show only first row Show all	>Potri.001G226600.2 pacid=42788484 polypeptide=Potri.001G226600.2.p locus=Potri.001G226600 ID=Potri.001G226600.2.v4.1 annot-version=v4.1 MNCSGLLVVFFLGNFFSWRTVSLLAIIPCLMQVVGLVFIPESPRWLASIGKEIEFEDALRRLRGVDAGFSQEAIEIKDATENFQRSEAGFQGLFQKKYAY PVMIGVGLMLLQQLGGNSVFAAYLSTVFAKASKSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27350		SFP1	Major facilitator superfamily ...		Potri.001G226600 [exp]	0	1
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	1.00	0.8555
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.005G069800 [exp]	6.00	0.6747
AT2G40410			Staphylococcal nuclease homolo...		Potri.010G182500 [exp]	10.00	0.6589
AT1G20480			AMP-dependent synthetase and l...		Potri.003G210701 [exp]	19.59	0.6425
AT1G20480			AMP-dependent synthetase and l...		Potri.003G210600 [exp]	36.74	0.5917
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	48.10	0.6308
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Potri.010G202000 [exp]	52.99	0.6128	ARP909
AT3G26610			Pectin lyase-like superfamily ...		Potri.010G044001 [exp]	55.82	0.5489
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015750 [exp]	57.48	0.6267
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	64.21	0.6240

Compare expression of checked genes

Potri.001G226600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.