Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44500 753 / 0 O-fucosyltransferase family protein (.1.2) AT3G07900 668 / 0 O-fucosyltransferase family protein (.1) AT5G63390 572 / 0 O-fucosyltransferase family protein (.1) AT1G20550 277 / 2e-85 O-fucosyltransferase family protein (.1) AT1G76270 275 / 1e-84 O-fucosyltransferase family protein (.1) AT5G35570 275 / 1e-83 O-fucosyltransferase family protein (.1) AT5G64600 268 / 1e-82 O-fucosyltransferase family protein (.1) AT4G24530 256 / 5e-78 O-fucosyltransferase family protein (.1) AT1G22460 254 / 4e-77 O-fucosyltransferase family protein (.1) AT3G54100 252 / 2e-75 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G022500 [exp] 991 / 0 AT2G44500 744 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.015G092600 [exp] 568 / 0 AT5G63390 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 269 / 2e-82 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 265 / 1e-81 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 266 / 4e-81 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 263 / 2e-80 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 260 / 2e-79 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 259 / 3e-79 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 257 / 2e-78 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003914 [exp] 745 / 0 AT2G44500 765 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10037475 [exp] 701 / 0 AT2G44500 672 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10017171 [exp] 268 / 5e-81 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 264 / 8e-81 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 263 / 4e-80 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 263 / 1e-79 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 259 / 8e-79 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 255 / 7e-78 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 256 / 2e-77 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 256 / 6e-77 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G227000.2 pacid=42788487 polypeptide=Potri.001G227000.2.p locus=Potri.001G227000 ID=Potri.001G227000.2.v4.1 annot-version=v4.1 ATGGCAAAGTCAAAGAATAATGCAAAGAAAGTTTCTTACATTTCAGTTCCATCACAAATTATCAATTCCTTATCTTCTTCTTCTTTGCAATCTCTGCTTC TTTCTCCAAAGAAACCATCACGAAACAGGTTTTTTGGGTTGAACTTGTATAGGAGTCCAAGATTTTGGTTCTTGGCTTTGTTTCTTTTTTGTTTTCTTGG TATGTTAAAGTTATCGTACAATCTTGACCCTTTAGTACCATTTTCTCCTTACCCTTGTGTGACTGGTCAGCCACAGCTGCAAGACTCTTTCTCTAAGAAG TTAACTACAAGATCACAGCTTGGTTTTGTTTCAAATGGTGAAAAGAATGATATAAAAGATCAAGAAGTTGGGTCTGTGGATGCTCGGGAGCTGAAATCTG AGGTGGGTTTTGGTTCAAATGAAGTAAAAGATGAGTCCTTGAAAGGTGTGGTTGATTTTCAGGGTGGAAAGTCTGATGGGGTTGAAGAGGAGAGTGAGTT TTGGAAACAACCGGATGGGTTGGGTTATAAGCCTTGTTTAAAGTTTAGTAGGGAGTATAGCAGATGGAGTGAGCTGATTGTTAAGAATAGAAGAAAGTAT TTGCTAGTTGTGGTTTCTGGTGGAATGAATCAGCAGAGGAATCAGATTGTGGATGCTGTGGTGATTGCAAGGATTCTTGGTGCTGCTTTGGTTGTTCCCA TTTTGCAAGTCAATGTCATTTGGGGAGATGAAAGTGAATTTTCTGATATATTTGATTTGGAGCACTTCAAGAGAGTTTTAGCAAATGATGTGAGAATAGT TTCGTCATTACCATCAACTCATATAACCACAAGGCCGGTGGTTGAGAGCCGAACTCCACTCCATGTCTCCCCTCAATGGATTCGTGCACGTTATCTTAAA AGGCTTAACAGAGAAGGTGTTTTACTTTTACGTGGTTTGGATTCAAGACTTTCTAAAGATCTTCCTTCCGATCTTCAGAAACTTCGATGCAAGGTGGCAT TTAATGCATTAAGGTTTGCGCCACCAGTTTTGGAGCTTGGTAACAAGCTTGCAGAGAGGATGCGGAGCAAAGGACCCTATCTTGCTCTTCATCTACGGAT GGAGTTGGATGTGTGGGTGAGGACTGGATGCCAACCTGGTTTGAGCCATGAATACGATGAGATTATCAATAATGAGAGGAAACAACGACCTGAACTCCTT ACTGCAAGGTCAAACATGACCTATCATGAAAGAAAGCTTGCTGGTCTTTGCCCCTTGAATGCAATGGAGGTTGCAAGGCTTCTTAAAGCTCTCGGAGCTC CAAGAAGTACAAGAATATACTGGGCAGGAGGGCAACCACTTGGTGGAAAAGAAGCTTTGCAACCATTAACCAGAGAATTTCCTCATTTCTACAACAAGGA AGATCTTGCCTTACCTGGTGAACTGAAGCCATTTGCAAATAGAGCTTCCTTGATGGCTGCCATTGATTATATAGTTTCAGAGAACAGTGATGTTTTTATG CCATCTCATGGTGGAAACATGGGTCATGCAATCCAGGGACATAGGGCATATGCAGGACACAAGAAGTATATAACCCCAAACAAAAGGCACATGCTCCCTT ATTTTCTAAATTCCTCTCTCCCTGGAGCTGAGTTCAACAGGATCATAAAAGAGTTGCATCGTGACTCCTTAGGACAACCAGAACTCAGGACTATCAAAGC TGGAAGAGATGTTACGAAATACCCGGTTCCTGAGTGTATGTGCAGTGATTCACATACTCGCTCCTCTTTGTGA
AA sequence Show only first row Show all	>Potri.001G227000.2 pacid=42788487 polypeptide=Potri.001G227000.2.p locus=Potri.001G227000 ID=Potri.001G227000.2.v4.1 annot-version=v4.1 MAKSKNNAKKVSYISVPSQIINSLSSSSLQSLLLSPKKPSRNRFFGLNLYRSPRFWFLALFLFCFLGMLKLSYNLDPLVPFSPYPCVTGQPQLQDSFSKK LTTRSQLGFVSNGEKNDIKDQEVGSVDARELKSEVGFGSNEVKDESLKGVVDFQGGKSDGVEEESEFWKQPDGLGYKPCLKFSREYSRWSELIVKNRRKY LLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKRVLANDVRIVSSLPSTHITTRPVVESRTPLHVSPQWIRARYLK RLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFNALRFAPPVLELGNKLAERMRSKGPYLALHLRMELDVWVRTGCQPGLSHEYDEIINNERKQRPELL TARSNMTYHERKLAGLCPLNAMEVARLLKALGAPRSTRIYWAGGQPLGGKEALQPLTREFPHFYNKEDLALPGELKPFANRASLMAAIDYIVSENSDVFM PSHGGNMGHAIQGHRAYAGHKKYITPNKRHMLPYFLNSSLPGAEFNRIIKELHRDSLGQPELRTIKAGRDVTKYPVPECMCSDSHTRSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44500			O-fucosyltransferase family pr...		Potri.001G227000 [exp]	0	1
AT3G45040			phosphatidate cytidylyltransfe...		Potri.009G007900 [exp]	2.64	0.8256
AT5G15880			unknown protein		Potri.017G110300 [exp]	3.87	0.8339
AT3G57690		AGP23, ATAGP23	ARABINOGALACTAN-PROTEIN 23, ar...		Potri.016G052001 [exp]	4.89	0.8400
AT1G61240			Protein of unknown function (D...		Potri.011G045300 [exp]	7.54	0.8540
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.010G238500 [exp]	8.24	0.8346
AT1G18740			Protein of unknown function (D...		Potri.002G067800 [exp]	11.35	0.7614
AT5G47530			Auxin-responsive family protei...		Potri.010G156200 [exp]	13.85	0.7684
					Potri.005G203550 [exp]	21.21	0.7851
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184701 [exp]	21.90	0.7874
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	22.73	0.8086

Compare expression of checked genes

Potri.001G227000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.