Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 614 / 0 BGLU17 beta glucosidase 17 (.1.2) AT5G44640 521 / 0 BGLU13 beta glucosidase 13 (.1) AT5G42260 519 / 0 BGLU12 beta glucosidase 12 (.1) AT2G44450 514 / 1e-179 BGLU15 beta glucosidase 15 (.1) AT3G60130 501 / 2e-174 BGLU16 beta glucosidase 16 (.1.2.3) AT2G25630 489 / 3e-170 BGLU14 beta glucosidase 14 (.1) AT1G47600 474 / 5e-164 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT5G24550 472 / 1e-162 BGLU32 beta glucosidase 32 (.1) AT5G54570 470 / 4e-162 BGLU41 beta glucosidase 41 (.1) AT1G51470 469 / 4e-162 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227300 [exp] 674 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 582 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.001G227400 [exp] 579 / 0 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.T085301 [exp] 559 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 558 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 543 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G223900 [exp] 529 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 529 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 527 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003915 [exp] 671 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 642 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 635 / 0 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 609 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 605 / 0 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 587 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 582 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 576 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 544 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10026057 [exp] 543 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G227200.1 pacid=42788401 polypeptide=Potri.001G227200.1.p locus=Potri.001G227200 ID=Potri.001G227200.1.v4.1 annot-version=v4.1 ATGGCAATTAGAGGTCCTTTACTAGTTTTGTTCCTGGCATTAATTTGCTTGGTAGCAACCACCCATGGTGCAAAACCAAGCCCTCTTGTGCCATTTAGCC GAAGCAGTTTCCCACCTGGTTTTTTGTTCGGAGCTGGATCTGCTGCCTATCAGATTGAAGGAGCAGCACTGATTGACGGAAGGGGATTTAGCATATGGGA TAAATTCACGAGGGAACATCCAGAAAAGATTTGGGATCGCAGCAATGGAGATGTAGCAAGTGATTTTTATCACAAGTTCAAGGATGACATAAAATTGATG AAACGTGTTGGCTTGGATACCTTCAGACTTTCCTTTTCTTGGAGCAGAATATTGCCGAAGGGAAAAGTTAGTCGAGGAGTGAACCCACTGGGTGTTAAGT TCTACAACAACGTCATCAACGAGCTTCTTCACAATGGTATAAAACCCCTTGTGACGTTACTCCATTATGATCCTCCACAAAGTCTCTATGATGAGTACGG TGGATTCCTAAGCTCCAAGATAGTAGATGATTTTGCAGAGTATGCAGACTTTTGCTTCAAAACATTTGGTGATCGAGTGAAATATTGGATAACAATGAAC GAACCAAATGGGCTGGCTATTAATGGTTACACTTTCGGTTCCTTTGCACCCGGTCGATGTTCTAAAACTCTTGGAAACTGCCCTGGGGGCAACTCTGCCG TCGAGCCCTATGTTGCTGCCCACAACATGATTCTTAGCCATGGAGCTGCCGTTAAAGTATACAAGGACAAGTACCAGGCTATTCAAAAGGGGCAAATTGG AATTACAATCGTAAGCCATTGGTTCGTACCAAAATTTAATACAACTGCTGACCGCATAGCTGTTTCCAGAGCTTTGGATTTCATGTTTGGATGGTTTGCA CATCCAATTACATTTGGTGATTACCCCGATAGCATGAGATCTTTGGTTGGAAATCGACTGCCCAAATTTACCAAAGAACAGTCTGCAATGCTAAAAGGAT CCCTCGATTTTCTTGGCTTAAACTACTATACAACAAATTATGCAGAAAGCATTCCTTTGAAAGCTACCGGGGCTAACCTTAGTTATACTGACGATAGGCG TGTCAGTCAAACTACTGAGAAAAATGGAGTTCCCATCGGCACACCGACTGACTTGAACTGGCTTTACGTCTACCCGAGGGGAATACAAGATGTTCTGCTG TACATCAAATATAATTACAAAAATCCACCAGTTTTTATTACTGAAAATGGAATTGCTGAAAATGCGTCGCGACCGATTGCCTTTGCCCTCAAGGATAGTT GGAGAATAAGATACCACAGTGCCCACCTCTCATATCTTTTGAAAGCTATCCAGAAGGGAGCTAACGTGAAGGCATACTATATATGGTCATTTTTGGACGA CTTCGAATGGGATGCTGGCTACACTGTTCGCTTCGGTGTGACTTACGTTGATTTCAAGAATAATTTGAAACGATATCTGAAAAGTTCAGCTAGATGGTTC CAGCTCTTGCTTAAAAAGTAA
AA sequence Show only first row Show all	>Potri.001G227200.1 pacid=42788401 polypeptide=Potri.001G227200.1.p locus=Potri.001G227200 ID=Potri.001G227200.1.v4.1 annot-version=v4.1 MAIRGPLLVLFLALICLVATTHGAKPSPLVPFSRSSFPPGFLFGAGSAAYQIEGAALIDGRGFSIWDKFTREHPEKIWDRSNGDVASDFYHKFKDDIKLM KRVGLDTFRLSFSWSRILPKGKVSRGVNPLGVKFYNNVINELLHNGIKPLVTLLHYDPPQSLYDEYGGFLSSKIVDDFAEYADFCFKTFGDRVKYWITMN EPNGLAINGYTFGSFAPGRCSKTLGNCPGGNSAVEPYVAAHNMILSHGAAVKVYKDKYQAIQKGQIGITIVSHWFVPKFNTTADRIAVSRALDFMFGWFA HPITFGDYPDSMRSLVGNRLPKFTKEQSAMLKGSLDFLGLNYYTTNYAESIPLKATGANLSYTDDRRVSQTTEKNGVPIGTPTDLNWLYVYPRGIQDVLL YIKYNYKNPPVFITENGIAENASRPIAFALKDSWRIRYHSAHLSYLLKAIQKGANVKAYYIWSFLDDFEWDAGYTVRFGVTYVDFKNNLKRYLKSSARWF QLLLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227200 [exp]	0	1
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128900 [exp]	2.00	0.9558
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136300 [exp]	4.00	0.9590
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026200 [exp]	4.58	0.9560
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170100 [exp]	5.47	0.9420
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	7.34	0.9510
AT2G27550		ATC	centroradialis (.1)		Potri.009G165100 [exp]	8.48	0.9196	Pt-TFL1.1
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G183400 [exp]	9.16	0.9149
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.003G211100 [exp]	10.19	0.9381
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	10.19	0.9488
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	10.58	0.9506

Compare expression of checked genes

Potri.001G227200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.