Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 513 / 5e-180 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 432 / 1e-148 BGLU12 beta glucosidase 12 (.1) AT5G44640 430 / 9e-148 BGLU13 beta glucosidase 13 (.1) AT2G44450 424 / 2e-145 BGLU15 beta glucosidase 15 (.1) AT3G60130 424 / 3e-145 BGLU16 beta glucosidase 16 (.1.2.3) AT5G24550 424 / 5e-145 BGLU32 beta glucosidase 32 (.1) AT1G47600 416 / 6e-142 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT1G26560 413 / 6e-141 BGLU40 beta glucosidase 40 (.1) AT1G51470 412 / 1e-140 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT3G18080 407 / 1e-138 BGLU44 B-S glucosidase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227300 [exp] 854 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 556 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.004G040700 [exp] 498 / 2e-174 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 481 / 1e-167 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 480 / 4e-167 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 473 / 2e-164 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.002G219600 [exp] 451 / 8e-156 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223720 [exp] 450 / 2e-155 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 450 / 3e-155 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019531 [exp] 631 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 545 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 513 / 5e-180 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 511 / 4e-179 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 507 / 6e-178 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 504 / 1e-176 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 499 / 2e-174 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 493 / 2e-172 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 488 / 2e-170 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10026057 [exp] 460 / 3e-159 AT2G44450 554 / 0.0 beta glucosidase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G227400.1 pacid=42790918 polypeptide=Potri.001G227400.1.p locus=Potri.001G227400 ID=Potri.001G227400.1.v4.1 annot-version=v4.1 ATGGCAAATATTCAAGGAGCCTTCCTCCTCCCTTTGGTAGTCGTTGCTGGCTTGTTAGCTAGCACTCACGGTGCAAAACCAAGCCGTTACTCAATGCCCT TCAATAGGACAAGTTTTCCAAAAGATTTCACGTTTGGAGCTGGCACTGCTGCTTATCAGTCTGAAGGAGCTGCATATATTGATGGAAAGGGACCAAGTAT TTGGGACACCTTCACCAAACAGCATCCAGAGAAAATTTGGGACCATAGCACAGGAAATGTAGCCATCGACTTTTATCATCGATATAAGGAGGACATACAA TTGATGAAAAAAATTGGCTTGGACTCTTTTAGGTTCTCCATCTCTTGGTCAAGAGTGCTACCGAAGGGAAAAATTAGTGGAGGAGTGAACCCTCTGGGTG TCAGATTCTACAACAATCTCATCAATGAGCTCTTAGCTAATGGCATAACACCTTTTGTAACATTGTTTCACTGGGATCTTCCACAAGCACTTGACGATGA GTATTCCGGATTCCTAAGCTCCAAAGCTGTGGATGATTACCTTGGCTATGCGGAATTTTGCTTCAAAACATTTGGCGATCGAGTGAAGCACTGGTGCACA TTTAATGAGCCATACTCGTTTAGCAACAATGGCTACAATGGCGGTACTTTCGCTCCAGGCCGTTGCTCTAACTTTGCCGGAAACTGCACGCTCGGTAACT CCGGTACCGAACCCTACATGGTAGCCCATAACTTGATTCTTGGACATGCAGCTGCTGTGAAATTGTACAGGGAGAAATATCAGGTTTCTCAAAAGGGAAA AATTGGGATCACTATAGTGACAAACTGGTTTATACCAAAATCTCCAAAATCAGAGGAAGATATCAAAGCAGCCTATAGAGAACTTGATTTTCTGTTTGGT TGGTTTGCGAATCCACTTACTTACGGAGATTATCCTGAGACCATGAAAGCTATAGTGGGACATCGACTACCCAAATTTACTAAAGAGGAATCTGCTTTGG TAAAAGGGTCAATAGATTTTCTTGGTGTGAATTACTACACTACAAATTATGCAGCAAACAATCCAGCTCCTAATAAAATCAACTTTAGTTACACTGGAGA TTCCCAAACCATTCTCTCAACTTCCAAGGGTGGACATCCTATCGGAACACCGACAGCTTTGAATTGGCTATTCATCTATCCGAAGGGAATTTATGACCTT ATGCTGTATGTAAGGGACAAGTACAAGAACCCTCCGGTTTACATTACTGAGAATGGTCTTGCTGATGCAAATAATGCATCATTGCCAGTTAAAGAAGCTC TGAGAGATGGGCTAAGAATAAGATACTTAGCTAGCCATCTACAATAG
AA sequence Show only first row Show all	>Potri.001G227400.1 pacid=42790918 polypeptide=Potri.001G227400.1.p locus=Potri.001G227400 ID=Potri.001G227400.1.v4.1 annot-version=v4.1 MANIQGAFLLPLVVVAGLLASTHGAKPSRYSMPFNRTSFPKDFTFGAGTAAYQSEGAAYIDGKGPSIWDTFTKQHPEKIWDHSTGNVAIDFYHRYKEDIQ LMKKIGLDSFRFSISWSRVLPKGKISGGVNPLGVRFYNNLINELLANGITPFVTLFHWDLPQALDDEYSGFLSSKAVDDYLGYAEFCFKTFGDRVKHWCT FNEPYSFSNNGYNGGTFAPGRCSNFAGNCTLGNSGTEPYMVAHNLILGHAAAVKLYREKYQVSQKGKIGITIVTNWFIPKSPKSEEDIKAAYRELDFLFG WFANPLTYGDYPETMKAIVGHRLPKFTKEESALVKGSIDFLGVNYYTTNYAANNPAPNKINFSYTGDSQTILSTSKGGHPIGTPTALNWLFIYPKGIYDL MLYVRDKYKNPPVYITENGLADANNASLPVKEALRDGLRIRYLASHLQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	1.00	0.9967
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	2.00	0.9877
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	2.44	0.9818
AT2G27240			Aluminium activated malate tra...		Potri.001G217200 [exp]	2.82	0.9729
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	3.16	0.9566
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	3.46	0.9785	Pt-ATML1.1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	4.58	0.9736
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	4.89	0.9771
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Potri.012G022500 [exp]	5.09	0.9517
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.001G267900 [exp]	6.32	0.9352

Compare expression of checked genes

Potri.001G227400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.