Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32850 717 / 0 Protein kinase superfamily protein (.1.2) AT5G08160 120 / 1e-29 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G34180 91 / 4e-19 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT1G33770 91 / 6e-19 Protein kinase superfamily protein (.1) AT1G03740 89 / 4e-18 Protein kinase superfamily protein (.1.2) AT4G18700 88 / 4e-18 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT1G53050 88 / 8e-18 Protein kinase superfamily protein (.1) AT5G45810 86 / 1e-17 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G10930 85 / 2e-17 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT3G07980 86 / 4e-17 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055200 [exp] 117 / 2e-28 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.012G057300 [exp] 117 / 2e-28 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.018G053800 [exp] 90 / 2e-18 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 90 / 2e-18 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G062800 [exp] 88 / 4e-18 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.005G251500 [exp] 87 / 6e-18 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.006G092900 [exp] 88 / 7e-18 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G048800 [exp] 87 / 9e-18 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 86 / 1e-17 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003916 [exp] 726 / 0 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 721 / 0 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007963 [exp] 126 / 2e-31 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10013493 [exp] 114 / 3e-27 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10031341 [exp] 94 / 2e-19 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 92 / 6e-19 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 92 / 8e-19 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10042816 [exp] 89 / 3e-18 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10012799 [exp] 89 / 5e-18 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10009062 [exp] 89 / 5e-18 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G228100.4 pacid=42788526 polypeptide=Potri.001G228100.4.p locus=Potri.001G228100 ID=Potri.001G228100.4.v4.1 annot-version=v4.1 ATGTGGAGGTTCAAACATTTTACTCAAAAAGAACCAGCTGGCCTTGAAGGTCGCTATGTTGATGTTGGCAATCTTAAGATTCATGTTCGAAATGCCATTG CGGAGGGAGGATTTTCCTGTGTATATTTAGCTCGAGATGCTGTGCATGCATCAAAGCAATACGCTTTAAAGCACATGATATACAATGATGAAGAATTGTC AGACTTGGTGATGAAGGAGATCAATGTGATGAAGGCGCTCAAAGGGCATCCTAATGTTGTTACACTTTATGCACATACCATCTTAGATATGGGAAGAACA AAGGAAGCACTCCTTGTAATGGAATTTTGCGAAAAATCTCTGGTTAATGTGCTGGAGAGCAGGGGAGCAGCATATTTTGAGGAGAAACAAGTCCTTTCCA TATTTAGAGATGTCTGCAATGCTGTTTTTGCTATGCACTCTCAATCTCTGCCAATCGCTCACCGAGATTTGAAAGCTGAGAATCTTTTGCTGGGGCCTGA TGGATTGTGGAAATTATGTGATTTTGGGAGCACCTCTACAAATCATAAACGCTTTGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACAACATTCGGAAG CACACAACACCTGCCTATAGAGCCCCTGAGATGTGGGATCTGTTGCGGAGAGATCTTATAAATGAGAAGGTAGACATATGGGCTCTTGGATGTCTGCTCT ATCGCATATGCTACTTCAAGAGTGCATTTGACGGAGAATCAAAGCTGCAAATATTAAATGGGAACTATCGCATTCCAGATTTACCCAAATACAGCTCGCC AGTGACAGACTTGATCAGAGACATGCTTCAAGCATCACCAGATGACCGACCAGACATCACGCAGGTATGGTTTCGTGTTAATGAGCAGCTACCAGTTAAT ATGCAGAAGTCATTGCCTGACGGACCACCTGAAATGCAATCTGCTGGTATACATGGAGGTATTGCAAAAGCTGCAAATAGGTCGCCTCCAATGCCTCAAA GAAGTCCACCACCTCCTCCTTCATCTGGGGGTGGGGGAGGTGGGGGACAGCTTGGTGCTTTCTGGTCAACGCCTCACGCAAAGGATTCACTGTTTGTCGA AGACAAGAGCAGACCTAAATTTGATGAAGAACCTAGCCATAACACATCACAACAAGATAGGAATCAGTCAGAGAATCGCAGTTTTCCCAAAAACGCTAGC CCTGCAAAGCAGGAAAATGTACATAACATTGTGGCTGGTAGGAGGAATGTGCATAATAAATCACATGTGCCTGAGGATGGTGCTTCCAAGGACTTTGAAT CAACTTTCTCTCAGAAAGATATGGATCATGGCATGGAGAGGCCAAAAGCATCAAAACCGGCTGCTACTCATTTATTTCAAGATGAGGCTTTTAGTACTTT TGTTGCTGAATTTGATAGCAATAAGCTCAACTCAAGAGTTAGCAATGACAAAGAAGGAAAAGAAGAAGCACTAGAGGCTGAAATAGAGAGGCTTAAAGAG CAGCTGAAGCAGGTAAACTCTGAGAAGGCCGAAATAACTTCGAAATTTGAAAAGCTATCTGCCATTTGTCGATCTCAGAGACAGGAGATACAGGAGCTCA AGCAAACACTAGCCGCAAGAACTCCTTCGCCGAATAAATATCAAGCCTCATCTAGAATTCAACCATCTGCAAGTCCTCCGCAAGAAAAATCTGACTGGAG TACCCCAAGCCCAGAGTCAAAGTCATGGCAAGCATTTGCAGATGATAACAAGTCACGGCAGAAGCCTGTTTCAAAAGGCAACAGTCCACAGTCTGTTAGA ACCAGAAACGCACACCAGAATAAGCAGGCTGCTGAATTAACATCTAATATTGATTCGTGGGGTTTTGGATCGGAGAGTTTTACAGCTGTACCTGCTGCCA GCTCTCAAATTTCAGGGTCTAATACTGAAGCACACTCAGGCGGGTCAAAGATTATGGAGAGCAAGCCAGCTACTCAACCTGCTGGATGGGCTGGTTTCTA G
AA sequence Show only first row Show all	>Potri.001G228100.4 pacid=42788526 polypeptide=Potri.001G228100.4.p locus=Potri.001G228100 ID=Potri.001G228100.4.v4.1 annot-version=v4.1 MWRFKHFTQKEPAGLEGRYVDVGNLKIHVRNAIAEGGFSCVYLARDAVHASKQYALKHMIYNDEELSDLVMKEINVMKALKGHPNVVTLYAHTILDMGRT KEALLVMEFCEKSLVNVLESRGAAYFEEKQVLSIFRDVCNAVFAMHSQSLPIAHRDLKAENLLLGPDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRK HTTPAYRAPEMWDLLRRDLINEKVDIWALGCLLYRICYFKSAFDGESKLQILNGNYRIPDLPKYSSPVTDLIRDMLQASPDDRPDITQVWFRVNEQLPVN MQKSLPDGPPEMQSAGIHGGIAKAANRSPPMPQRSPPPPPSSGGGGGGGQLGAFWSTPHAKDSLFVEDKSRPKFDEEPSHNTSQQDRNQSENRSFPKNAS PAKQENVHNIVAGRRNVHNKSHVPEDGASKDFESTFSQKDMDHGMERPKASKPAATHLFQDEAFSTFVAEFDSNKLNSRVSNDKEGKEEALEAEIERLKE QLKQVNSEKAEITSKFEKLSAICRSQRQEIQELKQTLAARTPSPNKYQASSRIQPSASPPQEKSDWSTPSPESKSWQAFADDNKSRQKPVSKGNSPQSVR TRNAHQNKQAAELTSNIDSWGFGSESFTAVPAASSQISGSNTEAHSGGSKIMESKPATQPAGWAGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	0	1
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	1.73	0.9378
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	2.44	0.9224	FAH1.3
AT3G01810			unknown protein		Potri.001G333200 [exp]	3.46	0.9352
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	5.19	0.9094
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	5.47	0.9163
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	5.91	0.9161
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	6.40	0.8735
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	8.48	0.9075	Pt-KT2.2
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	10.00	0.9181	SHMT3
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.005G089200 [exp]	11.91	0.8210	Pt-VIIIA.1

Compare expression of checked genes

Potri.001G228100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.