Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 534 / 5e-179 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 358 / 1e-110 lectin protein kinase family protein (.1) AT4G00340 301 / 2e-89 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 278 / 5e-81 S-locus lectin protein kinase family protein (.1) AT4G11900 275 / 9e-80 S-locus lectin protein kinase family protein (.1) AT4G21390 271 / 2e-78 B120 S-locus lectin protein kinase family protein (.1) AT5G24080 261 / 4e-78 Protein kinase superfamily protein (.1) AT1G61480 269 / 9e-78 S-locus lectin protein kinase family protein (.1) AT1G61380 266 / 1e-76 SD1-29 S-domain-1 29 (.1) AT5G35370 263 / 2e-75 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T084300 [exp] 722 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 721 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 707 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 694 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 693 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 687 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 682 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 681 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 678 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031805 [exp] 671 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 669 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 652 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 628 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 579 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 543 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 471 / 6e-154 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 445 / 7e-144 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 363 / 6e-117 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 347 / 2e-106 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G228300.2 pacid=42787658 polypeptide=Potri.001G228300.2.p locus=Potri.001G228300 ID=Potri.001G228300.2.v4.1 annot-version=v4.1 ATGTCTTGCAAGACTTTTCTATTCAAGCATTTGATCAATTCAAAATTCTTGAAGTTCCACCTCTTCATTTCAGAAACTGCAAAGCAGCTACACAACACCA AATCAATTCTCTCTCGAGAAACCAAGGAATGCATGGCTTCCTCAAATCTCCGTATTCTTCAAGCTCTCTTTGTTTCTCTTCTGCTTTTCATTCCAAAAGT TTTTTCCTTTGACTGTTCTCAACCTAAAGGCTCATCATTATCTTCACTTGAGGCAAACCCTTCATGGCTTTCTCCTAATGAAGAATTTGCCATTGGATTT CAGAAACTGCCCAACGATAATGAGAACCACTTCTTTCTTGCCATCTGGTTCAATAAGATACCTGAAACAACCATTGTGTGGTTTGCTCATACAGAACCAG CACCACAAGGGTCTACTTTAAAACTGACTGATGAAGGGAAGCTTGTACTCCATGATCCTCAAGGAAATAGTTTATGGGAGCGGCCTTCAACAGGTGGCGC AAAATCTATGTGCGCTTCTATGAATGATAGTGGCAACTTTATGCTCCTGGATGGAGACAATAATCCCATTTGGGAGACCTTCAATGAAACAACTGATACA ATCTTGCCTGGTCAAACGCTTAACATGGGAAGCAATCTCACTGCTCGATATTCTCGAGAAAGTTACGTTGATGGGCGCTTCCAGCTACACTTGCAGCCGG ATGGAAACCTGGTCCTTTATACTGTAACTATGCCAACTGGAGCTGTTCGTGGTGCTTATTGGGCCACCGGGACAATGACTGGCAATTCTAAGTTAGTATT TAATGAGAATGGATATATGTATGTCACAGATGGCACCCGATGGGTCTACAACCTTACCAAAAATGATACTGGGTCAAGTCAAGATTTCTACCACATGGCA AGGATTGATTATGATGGAGTATTTAGGCAATATCATTGCCCAAAGAGCAAAAATTGTGGCTTGAAGTGGAGTGTGGTGAAAAGATTTCCTGAAGATATTT GCTCTGTAATCCTGACGGAAGTAGGAAGCGGAGCTTGTGGCTACAATAGCATCTGTGTTGAAACAAATGGAGAACCTGCTTGCTTGTGCCCAGAAAATTA TTCTTACTTAAATGAATTTGCTAAAAATCAAGGTTGCAGGCCGAATTTTGAACTGCCAAGCTGCCGGCCCAATGGATGGGAATCAAACCTTGGGCTAGTA GAATTTGTTGAGTACAACAATACAGATTGGCCACTAGATGATTATGATCTTCAGATTGGAAGTGGGGTGGACTTGCAGACGTGTAAACAACTATGCCTTG ATGACTGTTTTTGTACGGTTGCTATTCATAATGGTAATAGTTGTTGGAAGAAGAAGTATCCTCTGTCAAATGGAAGACGCGAGCCTAATGTGAATAGAAC AGCTCTTGTGAAGGTTCCTAAAGTTAATGTTACAGAGCTCTATCTCGTATCACAACGCCAAAATAACAAGGACCAGTCGACAACGGTCCTCATTGTGTCA ATTCTCCTAGGAAGCTCTGTGTTCATTAATATCGTTATGACATTAGCTATTTGCATTGCCATATACTTCTCGTATCACAACAAGTTATTGAACATTTCAT CGGTTTCAAGTGTTGCTTCGACGAATATTAGAAGTTATGCATACAAAGAGCTTGAACAAGCAACTGGTGGCTTCAAACAGATATTGGGCAAAGGTGCTTT TGGAACGGTGTACAAAGGTGTATTAGCATCCCATCCCAAGAGGTTTGTTGCAATCAAGAAGTTAGAGAAGTTTGAACAAGAAGGCGAGAAGGAATTTAAG ACAGAAGTGAGTGTGATTGGTCAGACTCACCACAAGAATCTAGTCCGTCTGCTTGGTTACTGCGATGAGGGGGAGCACCGGCTCCTAGTATACGAGTACA TGACCAACGGTTCCTTGGCAAGCTTACTATTTGGAATCACCAGGCCTGATTGGAACCAAAGAGTACAGATTGCCTTTGGCATTGCAAGAGGCCTAATGTA CTTACATGAAGAGTGTAGCACTCAGATCATCCATTGTGATATAAAGCCTCAGAATATACTCCTAGACGAGTTCTATACACCTCGGATTTCTGATTTTGGA CTAGCAAAGCTCTTGGTGGCAGAGCAAACTCGAGTGGCTCGCACGAACATAAGAGGCACGGTCGGGTACTTTGCGCCTGAATGGTTTAGTAGAGCATCAA TCACAGTTAAGGTTGATGTCTACAGTTTTGGTGTTCTGTTACTAGAGATGATTTGTTGCAAGTCAAGTGTTGCATTTGGAATGGGAGATCAAGAGGAGGC ACTTATGGATTGGGTTTACGCTTGCTACTGCAAGAAGAAATTGGACAAGTTGGTTGAAAATGACGAGGATGCAAGAAATGACATGAAGAAGCTAGAGAGG TTAGTAATGGTGGCAATTTGGTGCGTTCAAGAGGATGCTTCACTCAGGCCATCCATGAAGAAGGTTACTCAAATGCTTGAGGGTGTTGTTGATGTTTCTG TGCCTCCACGCCCTTCAATTTATTGTTCAACATGA
AA sequence Show only first row Show all	>Potri.001G228300.2 pacid=42787658 polypeptide=Potri.001G228300.2.p locus=Potri.001G228300 ID=Potri.001G228300.2.v4.1 annot-version=v4.1 MSCKTFLFKHLINSKFLKFHLFISETAKQLHNTKSILSRETKECMASSNLRILQALFVSLLLFIPKVFSFDCSQPKGSSLSSLEANPSWLSPNEEFAIGF QKLPNDNENHFFLAIWFNKIPETTIVWFAHTEPAPQGSTLKLTDEGKLVLHDPQGNSLWERPSTGGAKSMCASMNDSGNFMLLDGDNNPIWETFNETTDT ILPGQTLNMGSNLTARYSRESYVDGRFQLHLQPDGNLVLYTVTMPTGAVRGAYWATGTMTGNSKLVFNENGYMYVTDGTRWVYNLTKNDTGSSQDFYHMA RIDYDGVFRQYHCPKSKNCGLKWSVVKRFPEDICSVILTEVGSGACGYNSICVETNGEPACLCPENYSYLNEFAKNQGCRPNFELPSCRPNGWESNLGLV EFVEYNNTDWPLDDYDLQIGSGVDLQTCKQLCLDDCFCTVAIHNGNSCWKKKYPLSNGRREPNVNRTALVKVPKVNVTELYLVSQRQNNKDQSTTVLIVS ILLGSSVFINIVMTLAICIAIYFSYHNKLLNISSVSSVASTNIRSYAYKELEQATGGFKQILGKGAFGTVYKGVLASHPKRFVAIKKLEKFEQEGEKEFK TEVSVIGQTHHKNLVRLLGYCDEGEHRLLVYEYMTNGSLASLLFGITRPDWNQRVQIAFGIARGLMYLHEECSTQIIHCDIKPQNILLDEFYTPRISDFG LAKLLVAEQTRVARTNIRGTVGYFAPEWFSRASITVKVDVYSFGVLLLEMICCKSSVAFGMGDQEEALMDWVYACYCKKKLDKLVENDEDARNDMKKLER LVMVAIWCVQEDASLRPSMKKVTQMLEGVVDVSVPPRPSIYCST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228300 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134701 [exp]	2.44	0.9533
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.010G220500 [exp]	3.16	0.9451
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.001G034100 [exp]	4.89	0.9332
AT3G14460			LRR and NB-ARC domains-contain...		Potri.003G200800 [exp]	8.00	0.9379
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134601 [exp]	10.24	0.9283
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	10.81	0.9443
AT4G04480			unknown protein		Potri.004G008000 [exp]	11.48	0.9215
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.010G123700 [exp]	13.85	0.9248
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	13.96	0.9378	NAC021
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.009G016200 [exp]	14.42	0.9332

Compare expression of checked genes

Potri.001G228300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.