Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 412 / 2e-142 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 383 / 2e-130 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 299 / 6e-99 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 188 / 3e-56 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT5G20030 50 / 1e-06 Plant Tudor-like RNA-binding protein (.1) AT3G57970 44 / 0.0001 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT1G80810 44 / 0.0002 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 43 / 0.0005 binding (.1.2.3) AT4G31880 43 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G022900 [exp] 743 / 0 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 441 / 8e-153 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 431 / 6e-149 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 431 / 9e-149 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 360 / 3e-122 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 223 / 3e-69 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 52 / 4e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.006G250600 [exp] 49 / 5e-06 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.003G181300 [exp] 48 / 1e-05 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031221 [exp] 378 / 6e-129 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 369 / 2e-125 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 366 / 1e-123 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 347 / 9e-117 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 313 / 1e-103 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 282 / 2e-92 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 149 / 1e-43 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 51 / 1e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10039082 [exp] 49 / 6e-06 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10017121 [exp] 49 / 7e-06 AT4G31880 473 / 2e-152 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [poplar] [flax] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Potri.001G229000.1 pacid=42792246 polypeptide=Potri.001G229000.1.p locus=Potri.001G229000 ID=Potri.001G229000.1.v4.1 annot-version=v4.1 ATGGATTACGAGCCTTACGATAGCAGTGGAACTGATGATGATCTTCCTCCATCACATCAAAACAGAATCCCCAGAGGGGGTCGTGTGGCTGGGAATGGAA GACCAGTTGGAGGTTCTGTCCCTTATTCTAGAATGTATGGTGAAACTGATATGGAGACTCAAATTCACCAACTTGAGCAAGAAGCATACAGTTCAGTTCT AAGAGCCTTTAAAGCACAAGCTGATGCTATTACTTGGGAGAAAGAAAGTTTGATAACAGAGCTTAGAAAGGAATTGAGATTGTCTAATGAGGAGCACAGA GAGCTTCTTGCCCGGGTTAATGCAGATGATGTAATAAGGAGGATAAGGGAATGGAGACAGGCAGGTGGGCATCAATCTGGCATGCTCACTACAGGTCAAG CTGTTCATGATCCAATACCTAGTCCTACTGTCTCTGCTTCTCGTAAGAAACAGAAGATGACCTCATCAATTCTTTCTCAATCCTTTGCTGGGCCATCTCC ATCTTTTCATCCACAACCAGTTTCTGCATCACAACAGCCATCTTCATCTGCTGCTAAACGTGGACCGGTAACAGGACCCAAGGGCAAGAAGCAAAAACCA GGTTTACCTGGTGCTTCTTCAATGAAGTCCATTCCATACCCATCCTCAGGTCCATCTGGAAGAGGTCAAGTTGCTAATAGACTATCTTCTGGTGCTGTTC CTGAAGGAGCTGATCAATATATTGGGAAGAGAGTCAAAACAAGGTGGCCTGATGATAATCACTTTTATGAGGCTGTTATAACTGACTTCAACCCAATTGA GGGGCGGCATGCTCTGGTGTATGATATGGGAACAGCAAATGAGACATGGGAATGGGTTAATCTCTCAGAGATCTCTCCTGAGGATATACAATGGGTAGAT GAAGACCCTGGAATCTCTCATCGTGGCAATTATGGTGGTTCAGGGCATGGGATAAATAGGTCAATGGGCCGGGATGGTGGTCCTGGTCCTGGTCCTGGTC CTGGAAGAGGTAGAGGGGTTACCAAAGGTCAATCCAGGAAAGAGTTGTTGCCTTCACAAAATGGGATTGGAAAGAAGGTGCCCGATGATATACAAATTCT TCATACAGATTCTCTAATCAGGGAGGTAGAGAGAGTTTTCAATGCAAATCATCCTGATCCTCTTGAGATTGAGAAAGCAAAGAAAGTATTGAAGGATCAT GAGCAAGCACTAGTAGATGCAATTTCAAGGCTCGCTGATATTTCTGATGGTGAAAGTGATGAAGGTGGCCGCCGTTATGGGCAGGCATTGGAGAGAGAAT GA
AA sequence Show only first row Show all	>Potri.001G229000.1 pacid=42792246 polypeptide=Potri.001G229000.1.p locus=Potri.001G229000 ID=Potri.001G229000.1.v4.1 annot-version=v4.1 MDYEPYDSSGTDDDLPPSHQNRIPRGGRVAGNGRPVGGSVPYSRMYGETDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHR ELLARVNADDVIRRIREWRQAGGHQSGMLTTGQAVHDPIPSPTVSASRKKQKMTSSILSQSFAGPSPSFHPQPVSASQQPSSSAAKRGPVTGPKGKKQKP GLPGASSMKSIPYPSSGPSGRGQVANRLSSGAVPEGADQYIGKRVKTRWPDDNHFYEAVITDFNPIEGRHALVYDMGTANETWEWVNLSEISPEDIQWVD EDPGISHRGNYGGSGHGINRSMGRDGGPGPGPGPGRGRGVTKGQSRKELLPSQNGIGKKVPDDIQILHTDSLIREVERVFNANHPDPLEIEKAKKVLKDH EQALVDAISRLADISDGESDEGGRRYGQALERE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G229000 [exp]	0	1
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	1.00	0.8877
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	2.00	0.8683
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Potri.006G046500 [exp]	6.48	0.8621
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.003G094100 [exp]	10.63	0.8038
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	11.48	0.8347
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	11.61	0.8674
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	11.61	0.8709	Pt-RGA.54
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	13.03	0.8528
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	14.49	0.8604
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	15.29	0.8523

Compare expression of checked genes

Potri.001G229000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.