Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67030 476 / 2e-163 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT2G29720 97 / 2e-21 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 93 / 1e-20 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT5G05320 59 / 3e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G11330 59 / 4e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT4G38540 57 / 2e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 45 / 0.0001 MO1 monooxygenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138400 [exp] 484 / 9e-166 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.007G044300 [exp] 479 / 5e-164 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.001G152600 [exp] 85 / 2e-17 AT2G35660 658 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Potri.009G023001 [exp] 65 / 1e-12 ND / Potri.019G003700 [exp] 66 / 3e-11 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 63 / 2e-10 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 62 / 4e-10 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 62 / 5e-10 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 61 / 7e-10 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009359 [exp] 460 / 7e-156 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10019342 [exp] 427 / 1e-143 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10000593 [exp] 92 / 1e-19 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Lus10034467 [exp] 77 / 4e-15 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 65 / 4e-11 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 64 / 7e-11 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 62 / 3e-10 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 61 / 1e-09 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 61 / 1e-09 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 61 / 2e-09 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G229100.1 pacid=42791521 polypeptide=Potri.001G229100.1.p locus=Potri.001G229100 ID=Potri.001G229100.1.v4.1 annot-version=v4.1 ATGTGCAAAAAGCAAGCTAGAAAAGCCAAAAGTTACCAACTTTTTTCATTCTTGATCAAATCACCAATGGCAACATTTCATTGTCTGAGTTCTAGCTATT ACCATTACAAGAATTGCAATACTGGTTTTGTGGACTTTAGATTCAAAAGAAGCAGCTTTGTTGTCAGGTGTGAAAGGGCAAGTTGTTGTAATCAAGGTTC TTCATGTGTAGAGAGGGATGAGAAGAGGAGGCTCAGGATCTTGATTGCTGGTGGGGGTATAGGGGGATTGGTTTTGGCTTTAGCAGCAAAACATAGAGGA TATGACGTGAAGGTGTTTGAGAAGGATTTGAGTGCAGTAAGAGGGGAGGGTAGGCACAGGGGTCCTATTCAATTATTGAGTAGTGCTTTGGCAGTTTTGC AGGTTATTGATGGGAATGTTGCAAAGCAAATTATGGACGCTGGCTGTGTTACTGGTGACCGCATCAATGGCGTTGCAGATGGCGTCTCAGGTAAATGGTT TATTAAATTTAATCTCTTGAATCATGCTATGAAGAGAGGACTCCCTGTTACCTCTGTTATATGTAGAATGGCATTGCAAGACATTTTACTCAACGGTGTT GGTTTAGACATAGTAAGAAACAAATCTAAAGTTGTTGACTTCATGCAAGATTCTAACAAGGTTACAGTGATCCTTGAGGATGGACAGCATTATGATGGTG ATGTTTTAGTTGGGGCAGATGGCATATGGTCAAAAGTTCGGTCAAAACTTTTTGGGCAGGAGGATGCAAAATATTCAGATTATACATGCTATAGTGGACT TGCAAACTTTGTCCCACATTATGTTGACTCTATTGGGTATCGGGTGTTCTTAGGATTGAACCAGTACTTTGTTGCTTCAGATGTTGGAAATGGAAAGATG CAATGGTATGCTTTCCACAAGGAGCCTCCTAATAACACAGATCCTCCAAGAGGAAAGAAGAAGAGGCTGCTAAATTTGTTTGGACATTGGTGCAAGGAAG TAGTTGAACTAATATCAGAAACACAAGAGGATATGATTCTACGAAGGGACATTTATGATAGAGACATGATCTACACCTGGGGGATTGGAAGGGTGACTCT GCTAGGCGATGCTGCTCATCCGATGCAACCAAATCTGGGGCAAGGGGGTTGCATGGCAATTGAGGACTGCTACCAACTTATTCTCGAGCTCGATAAGGTT GTCAAGAGTGGCTTAGATTTTCAACAGTCAAACGAAATTTCCACCATGCTTCGAAGGTACGAGAAGAAAAGAATGTTCCGCATTAGTACAGTTCATGCAG CCAGCAGAATGGCATCGAAAGCGCTCACCGCTTACCGACCTTACATGGAATTTGGATCTGGCTCCTTGTCTTATATATCATCTCCAAAGATAACCAAACC CTCAGTTCTTGTGGTACGTGCTTTTCTACAAATTTTCATGCCGCAATTCATGATTTGGATGATGGCTGGCCATGGATTTTGGTGA
AA sequence Show only first row Show all	>Potri.001G229100.1 pacid=42791521 polypeptide=Potri.001G229100.1.p locus=Potri.001G229100 ID=Potri.001G229100.1.v4.1 annot-version=v4.1 MCKKQARKAKSYQLFSFLIKSPMATFHCLSSSYYHYKNCNTGFVDFRFKRSSFVVRCERASCCNQGSSCVERDEKRRLRILIAGGGIGGLVLALAAKHRG YDVKVFEKDLSAVRGEGRHRGPIQLLSSALAVLQVIDGNVAKQIMDAGCVTGDRINGVADGVSGKWFIKFNLLNHAMKRGLPVTSVICRMALQDILLNGV GLDIVRNKSKVVDFMQDSNKVTVILEDGQHYDGDVLVGADGIWSKVRSKLFGQEDAKYSDYTCYSGLANFVPHYVDSIGYRVFLGLNQYFVASDVGNGKM QWYAFHKEPPNNTDPPRGKKKRLLNLFGHWCKEVVELISETQEDMILRRDIYDRDMIYTWGIGRVTLLGDAAHPMQPNLGQGGCMAIEDCYQLILELDKV VKSGLDFQQSNEISTMLRRYEKKRMFRISTVHAASRMASKALTAYRPYMEFGSGSLSYISSPKITKPSVLVVRAFLQIFMPQFMIWMMAGHGFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.001G229100 [exp]	0	1
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	3.46	0.7027
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.001G028400 [exp]	7.54	0.6746
AT5G41620			unknown protein		Potri.003G135000 [exp]	8.36	0.7028
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	17.05	0.7132
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	23.36	0.6669
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	27.56	0.6938	XRN4.2
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	33.46	0.6597
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	35.39	0.6954
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.001G192300 [exp]	37.09	0.6563
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G116700 [exp]	45.91	0.6160

Compare expression of checked genes

Potri.001G229100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.