Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44430 303 / 3e-94 DNA-binding bromodomain-containing protein (.1) AT3G60110 224 / 3e-64 DNA-binding bromodomain-containing protein (.1) AT2G42150 166 / 1e-43 DNA-binding bromodomain-containing protein (.1) AT3G57980 106 / 7e-24 DNA-binding bromodomain-containing protein (.1) AT1G61215 71 / 1e-12 BRD4 bromodomain 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G023100 [exp] 731 / 0 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 107 / 4e-24 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 107 / 7e-24 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 105 / 1e-23 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.004G036900 [exp] 77 / 1e-14 AT1G61215 323 / 1e-105 bromodomain 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010335 [exp] 326 / 1e-102 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10021861 [exp] 143 / 2e-37 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10021860 [exp] 97 / 1e-21 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 76 / 8e-14 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10031219 [exp] 71 / 2e-12 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10018457 [exp] 65 / 8e-11 AT1G61215 288 / 6e-93 bromodomain 4 (.1) Lus10011227 [exp] 65 / 8e-11 AT1G61215 288 / 7e-93 bromodomain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.001G229300.2 pacid=42789256 polypeptide=Potri.001G229300.2.p locus=Potri.001G229300 ID=Potri.001G229300.2.v4.1 annot-version=v4.1 ATGGCTAACCAAGAAGAAGACATTCACCACCAAAACCAACAGTCATGGGGCACGTGGGAAGAGCTGTTGTTAGCAAGTGCCGTCAAGCGTCATGGTTTCA AGAACTGGGATTCCGTTGCTTTAGAACTTCAAACCAAAACCTGCCTTCCTCATCTCTTAACCACTGCTCAAATTTGCCAGCAGAAATACCTTGACCTCAA CCGCAGATTCAATACCACCACCATCAACAACCTCCATCACAACCATACACCGGAGGAGGATAATCAAGATGAAGAACAAAACAACATTAACACTGATATT ATTAATAATAATATTGTAAGCGTTCCATGGCTCGAAGAACTTCGTAAACTCCGTGTTGCGGAGTTGAAACAAGAGGTCCAACGATACGATGTTTCCATCC TTACTTTGCAATTGAAGGTGAAAAAATTGGAGGAAGAGCGAGAGATAAGCGTTCAAGAAGGAGATGGCAATACAGAAAAACCAGATCTGAAGGCAGATAG ATTGATAAACGAGGATGAACCGGGGAAACCGGGTTCGGTTTCAGGTGAGGAGTCGGACCCGGAGGACCGGTCGGTGAATGAATCGAATTCGACTGCCTCG GGTGGGGGAGAAGATGCGGTGGCGAAATTAGAGGAAGTCGAACCGGTTCAGGGAGGGTCTGGTGAACCGGACCCGGTTGTGAGCGGGTCGAATCGGAAAG CGCTGGATGAGGGTGGTGGTGGTGGAGGGGAGGAGTCGTGCGAGTTTGGCGACTCGGTGACTCAGTTGAGTTGTGAGTCGTTGAATTCGGGAAGGAAGAG GAAAGGGAGCGAGAGAAAGGAGGAGGTTTCAGTAACAGGCGGTGAGGAAACGGTGGCGGTGAAATCTGAACCGGTGGTTGGGTTTTTAGAGATGATTAGG GCCCACAGAAATGGTTCTCTTTTTGAAAGCCTGCTTGAGAGCCAGGAAATGGGTGTGTATAAAGACATGATCCGGCAGCATATGGATATGGAAGCAATAC AAGCAAAGCTAGAACAAGGCTCCTACTCTCCTTCAAAACTTTTGTTCTTCCGAGATCTTTTGCTTCTCTTCAACAATGCTTTAGTTTTCTTTCCCAAACA CTCTGTCGAATCACTCACCGCCCACAAAATCCGATCCCTTGTCATGGATGAAATGAGAAAAGATATCCAAAAATCTGATTCTACTGTGGTGCCAGAAAAT ATTCCTTCCCAACCCAAACGTGAACTTGAAAGATCAGATTCATTGCTCGCTAAACACAAGTCTTCCATCCCTATTATAGTTTGTCGTAAACGCAGTTCAA TATCGGCTAAGCCTTCCTCTTCTAGCCTAGGGCCAAAGATTGAGCAGCAGCAGCAGCAAAGCAATGAGAACAAACCAGTTAATGATCTGAAACCGCCTGC TGTTGAGCAGGGTTTGCTAAAGATGAAATCTGAAGAGAAGCCTGTAACTGGTGCAAGAAGTACCAGGAGAGGTAATAAGAATCTTGCGAAGGGTTCTACT TCTCCGAGCAAGAAGCAAAATACAAGCCCTGACACAAAAGTTGCTGCACCTGACAAGTCTGAAACTCCTAAAACCGAAAAGAAGAAAAATGAGGCATTGC CATTGGAGAAGAAAAAAAGTGCGGTTGATTTCTTGAAGAGAATAAAGAAGAATTCTCCTGCAGAGACACCAAAGAATAATAATAGAGGAGCTAGTAGTGG TGGAGAGCGAAAAATGGAAGGAAGTGGTGGGAAAGGAGAGAGAGGGAAAGAAAGAGTGTTGAAGAATAGTGATAAAAAACAAGGAAAGCAGGAGAGTAGT CCATCAAAGAAGAATGTTGGGAGGCCATCGAAGAAGGCAGCAGAGGAGAGTAGGGTTTCAGGAAAGCGTGGCAGGGACAGTGGCGGCAAGGAGGTGGCAA AGAGGCCAAGAAAGCGGTCTAGGAGGAAGTAG
AA sequence Show only first row Show all	>Potri.001G229300.2 pacid=42789256 polypeptide=Potri.001G229300.2.p locus=Potri.001G229300 ID=Potri.001G229300.2.v4.1 annot-version=v4.1 MANQEEDIHHQNQQSWGTWEELLLASAVKRHGFKNWDSVALELQTKTCLPHLLTTAQICQQKYLDLNRRFNTTTINNLHHNHTPEEDNQDEEQNNINTDI INNNIVSVPWLEELRKLRVAELKQEVQRYDVSILTLQLKVKKLEEEREISVQEGDGNTEKPDLKADRLINEDEPGKPGSVSGEESDPEDRSVNESNSTAS GGGEDAVAKLEEVEPVQGGSGEPDPVVSGSNRKALDEGGGGGGEESCEFGDSVTQLSCESLNSGRKRKGSERKEEVSVTGGEETVAVKSEPVVGFLEMIR AHRNGSLFESLLESQEMGVYKDMIRQHMDMEAIQAKLEQGSYSPSKLLFFRDLLLLFNNALVFFPKHSVESLTAHKIRSLVMDEMRKDIQKSDSTVVPEN IPSQPKRELERSDSLLAKHKSSIPIIVCRKRSSISAKPSSSSLGPKIEQQQQQSNENKPVNDLKPPAVEQGLLKMKSEEKPVTGARSTRRGNKNLAKGST SPSKKQNTSPDTKVAAPDKSETPKTEKKKNEALPLEKKKSAVDFLKRIKKNSPAETPKNNNRGASSGGERKMEGSGGKGERGKERVLKNSDKKQGKQESS PSKKNVGRPSKKAAEESRVSGKRGRDSGGKEVAKRPRKRSRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44430			DNA-binding bromodomain-contai...		Potri.001G229300 [exp]	0	1
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	1.00	0.8007
AT4G10600			RING/FYVE/PHD zinc finger supe...		Potri.001G448900 [exp]	12.12	0.7623
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	18.11	0.7541
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	20.12	0.7502
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	20.24	0.7337
AT1G06230		GTE4	global transcription factor gr...		Potri.019G090700 [exp]	23.06	0.7737
AT1G09195			unknown protein		Potri.005G020100 [exp]	24.91	0.7071
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	26.68	0.7392
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	27.98	0.7012	Pt-PP1.5
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	28.14	0.7068

Compare expression of checked genes

Potri.001G229300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.