Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27660 168 / 5e-47 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44400 136 / 1e-39 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 123 / 3e-33 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 123 / 4e-33 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 122 / 5e-33 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 122 / 9e-33 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 116 / 1e-30 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 110 / 1e-28 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G42060 97 / 2e-23 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 86 / 5e-19 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038400 [exp] 209 / 1e-65 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057900 [exp] 137 / 8e-37 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229900 [exp] 131 / 3e-36 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 98 / 2e-22 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 93 / 8e-21 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 92 / 2e-20 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 90 / 2e-20 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 91 / 7e-20 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 90 / 1e-19 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016256 [exp] 100 / 4e-24 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 98 / 4e-24 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 101 / 1e-23 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 86 / 7e-19 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10004165 [exp] 86 / 1e-18 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10017477 [exp] 78 / 2e-16 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 72 / 5e-14 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.001G229500.1 pacid=42790337 polypeptide=Potri.001G229500.1.p locus=Potri.001G229500 ID=Potri.001G229500.1.v4.1 annot-version=v4.1 ATGGGGAGGCTACCTGCCCAAACTGAAGCTGCAATTCAGCATTTCAGCCATCCACACCCATTACAGCTCTCCAATTACCAGCCCCAACAGACGCTTTGCC TAGCTTCATGTTCAGGTTGCAAGCTCAAGATCTCGGGATGGATCTACGCTTGCACACAGTGCAACTACTTTCTTCATGTTTCTTGTTCCCAAATGCCTCA ACAGATCACTCATCCATATCACCAAAACCATGTTCTGTCTCTCCTCTCAACCCCCATGTATCCTGGAGACTTATTCAACTGTGATGCGTGTGGGAAGCAA GGAAATGGTTTCTCTTACCATTGTGGAACTTGCAACATTTATATCCATACCACATGTGCGGCAATGCCCTTGGTGCTCACCCACCAGTCTCATCATCACC AGTTGAATCTTACACCCTTTGCTCCTTACCCTAACATGAGCTTTTCTTGTGACATGTGCCACAACTTTGGTTCCAAGCAATGGCTCTATAGGTGCAACCT CTGTGGATTTGATGCTCACTTGGATTGTGCCGTATCACAGCCAAATCCAGCTCAAGCTCAAGCCCAATACTACCAATCAACAGCACCAGCATCAGGTATT CCTCAGTATCAGGCCGTTGGAACTCCACTGGCAACAGGTCCTGTCATGCAAAACCTTGCACCTAACAATTATGTGCCAAAAGCTGCTACCTCAAATGTTT TTGGATCAAATATGCCTATGTCTTATGGGAGACCAAGGGGGCAGGCGAATTCTTCATTGAACCAGCTAGGCTCTATATTGTTGCCAGCACTACTTGGTAT TGGCATCGGTGGTCTTGGTACTGGTGGCAGAAATAATAGTGGCGGAGGTATTAATCTTGGAGGCACCTTTGGTGGGGGTGGTGGGGATTTATCATCATCA TTAAGTGGAGTTGATATTGGAGGATTTGGAGGTGGAATGGACCTTGGAGGTGGTTCCAGTTTTTAG
AA sequence Show only first row Show all	>Potri.001G229500.1 pacid=42790337 polypeptide=Potri.001G229500.1.p locus=Potri.001G229500 ID=Potri.001G229500.1.v4.1 annot-version=v4.1 MGRLPAQTEAAIQHFSHPHPLQLSNYQPQQTLCLASCSGCKLKISGWIYACTQCNYFLHVSCSQMPQQITHPYHQNHVLSLLSTPMYPGDLFNCDACGKQ GNGFSYHCGTCNIYIHTTCAAMPLVLTHQSHHHQLNLTPFAPYPNMSFSCDMCHNFGSKQWLYRCNLCGFDAHLDCAVSQPNPAQAQAQYYQSTAPASGI PQYQAVGTPLATGPVMQNLAPNNYVPKAATSNVFGSNMPMSYGRPRGQANSSLNQLGSILLPALLGIGIGGLGTGGRNNSGGGINLGGTFGGGGGDLSSS LSGVDIGGFGGGMDLGGGSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.001G229500 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	1.00	0.9497
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	1.41	0.9495	CYP716.1
AT2G45360			Protein of unknown function (D...		Potri.001G117600 [exp]	8.83	0.8740
					Potri.001G045901 [exp]	12.00	0.9235
AT1G49030			PLAC8 family protein (.1)		Potri.012G060900 [exp]	12.04	0.8879
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Potri.008G121500 [exp]	12.48	0.8922
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.004G208500 [exp]	12.64	0.9245	HMGR3.4
AT1G30760			FAD-binding Berberine family p...		Potri.011G161100 [exp]	14.42	0.9180
AT4G23050			PAS domain-containing protein ...		Potri.001G108900 [exp]	14.59	0.9389
AT5G60700			glycosyltransferase family pro...		Potri.009G010900 [exp]	15.87	0.9132

Compare expression of checked genes

Potri.001G229500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.