Plant FIBer expression Database

Potri.001G230200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027957
[exp]
45 / 7e-07 ND /
PFAM info
Representative CDS sequence
>Potri.001G230200.1 pacid=42791643 polypeptide=Potri.001G230200.1.p locus=Potri.001G230200 ID=Potri.001G230200.1.v4.1 annot-version=v4.1
ATGGCTTCTTCCTTTTCTTCTCCCAAACTGATTCATGGGTTTCATGGTCCAAATAGTTGCAGTTGCATACCTCATTTTCACTCTATCAAACTTGGCAGCA
ACCGCTCTCAAACCCCTCTCAGTTTCAGGTTCAGAAATGCCGCAAGATTGCAGTTAAGGACAAGGTTATATACTGTGTTTGCTTCAAACTCCAGCCCTTC
TGATGGAGATTCCAGCGAAGAGAAATCCGGCGGGACAATATCCAGCGATGATGCCCAAGGTCCTCCATTCCTAACTATTTTGGCAGGATTCCTAGTTTTT
TCCCTCTTATGTTGGGTTTTTGGGTCTATCATCATGTGGCTGTTTGGTCTAATTGTTAAGGTGCCGCTTTCCAAGTAG
AA sequence
>Potri.001G230200.1 pacid=42791643 polypeptide=Potri.001G230200.1.p locus=Potri.001G230200 ID=Potri.001G230200.1.v4.1 annot-version=v4.1
MASSFSSPKLIHGFHGPNSCSCIPHFHSIKLGSNRSQTPLSFRFRNAARLQLRTRLYTVFASNSSPSDGDSSEEKSGGTISSDDAQGPPFLTILAGFLVF
SLLCWVFGSIIMWLFGLIVKVPLSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G230200
[exp]
0 1
AT5G16710 DHAR3 dehydroascorbate reductase 1 (... Potri.017G125100
[exp]
1.41 0.9657
AT5G17870 PSRP6 plastid-specific 50S ribosomal... Potri.002G112500
[exp]
3.46 0.9594
AT2G21530 FHA SMAD/FHA domain-containing pro... Potri.009G156900
[exp]
4.00 0.9669
AT4G28210 EMB1923 embryo defective 1923 (.1) Potri.013G146900
[exp]
5.47 0.9500
AT5G13120 Pnsl5, ATCYP20-... Photosynthetic NDH subcomplex... Potri.001G060200
[exp]
9.00 0.9527
AT1G16080 unknown protein Potri.003G185754
[exp]
10.00 0.9537
AT2G21530 FHA SMAD/FHA domain-containing pro... Potri.009G156700
[exp]
10.39 0.9558
AT4G08280 Thioredoxin superfamily protei... Potri.002G085200
[exp]
10.77 0.9158
AT2G32650 RmlC-like cupins superfamily p... Potri.014G156900
[exp]
10.90 0.9413
AT5G63310 NDPK1A, NDPKIAI... NDP KINASE 1A, NUCLEOSIDE DIPH... Potri.012G093800
[exp]
11.53 0.9401

Potri.001G230200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.