Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44350 791 / 0 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) AT3G60100 764 / 0 CSY5 citrate synthase 5 (.1) AT2G42790 111 / 4e-26 CSY3 citrate synthase 3 (.1) AT3G58750 110 / 1e-25 CSY2 citrate synthase 2 (.1) AT3G58740 84 / 5e-17 CSY1 citrate synthase 1 (.1) AT2G11270 59 / 5e-11 citrate synthase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G023900 [exp] 146 / 1e-42 AT2G44350 143 / 2e-42 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Potri.016G089300 [exp] 110 / 6e-26 AT3G58750 855 / 0.0 citrate synthase 2 (.1) Potri.014G141900 [exp] 107 / 8e-25 AT3G58750 867 / 0.0 citrate synthase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019688 [exp] 779 / 0 AT2G44350 784 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Lus10006943 [exp] 412 / 7e-142 AT2G44350 428 / 2e-148 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Lus10031384 [exp] 110 / 1e-25 AT3G58750 796 / 0.0 citrate synthase 2 (.1) Lus10010945 [exp] 110 / 1e-25 AT2G42790 855 / 0.0 citrate synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [poplar] [flax] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G230500.9 pacid=42789065 polypeptide=Potri.001G230500.9.p locus=Potri.001G230500 ID=Potri.001G230500.9.v4.1 annot-version=v4.1 ATGGTTTTCTTTCGAAGCGTTCCTCTTCTTTCCAGGCTTCGTTCTCATGCTCAGCATCAGGTTCAGAAACAGTCAAACCTCAGCAATTCTTTCAGATGGA TTCAAACGCAGACCATCTCTTCTGATCTTGACCTTCATTCTCAGCTGAAGGAATTGATCCCAGAACAACAGGAGCGCCTGAAGAAGCTTAAGTCAGAGTA TGGAAAAGTTCAATTGGGAAATATTACTGTTGACATGGTGCTTGGGGGGATGAGAGGAATGACTGGATTACTGTGGGAGACTTCATTACTTGATCCAGAT GAGGGAATTCGCTTTAGGGGCATGTCAATTCCTGAATGCCAAAAATTGTTGCCAGCTGCAAAGCCTGGTGGAGAACCTTTGCCAGAGGGTCTTCTTTGGC TTCTTTTAACAGGAAAGGTACCAACCAAAGAGCAAGTCGGTGCCTTATCGAAGGAATTGCGTGACCGTGCCTCTGTTCCAGATTATGTCTTTAAGGCCAT TGATGCCTTACCTGTCACTGCTCATCCAATGACTCAGTTTGCAACTGGTGTTATGGCCCTACAGGTTCAGAGTGAATTTCAAAAAGCCTATGAAAAAGGG ATTCATAAATCAAAGTACTGGGAGCCAACATATGAGGATTCTCTTAGTCTGATTGCTCGTGTGCCAATAGTAGCTTCATATATTTATCGAAGGATTTACA AAGATGGGAAAGTTATTCCTATGAATGACTCTTTGGATTATGGTGGAAATTTTTCACACATGTTGGGATTTGATAGTCCTGAAATGCAAGAGCTTATGAG GCTTTATGTTACAATCCATAGTGACCATGAAGGTGGGAATGTCAGTGCTCATACTGGTCACCTGGTTGCTAGTGCACTTTCAGATCCTTATCTTTCATTT GCAGCTGCATTGAATGGTTTAGCTGGGCCACTCCATGGCTTGGCAAATCAGGAAGTTCTCCTTTGGATCAAATCCGTGGTAGAAGAGTGTGGAGAGAATA TAACCACAGAACAACTTAAAGACTATGTTTGGAAAACATTAAATAGCGGAAAGGTTGTTCCTGGATTTGGTCATGGAGTTCTACGCAAAACTGATCCAAG ATATACATGTCAAAGGGAGTTTGCATTGAAGCATTTACCTGATGATCCATTGTTCCAGCTGGTCTCTAAGCTATATGAAGTTGTACCTCCAGTTCTTACC CAGCTGGGCAAGGTTAAAAACCCATGGCCTAATGTTGATGCTCACAGTGGGGTGTTGCTGAACTACTACGGTTTAACTGAAGCTAGGTACTATACTGTAC TTTTCGGTGTATCAAGGAGTATTGGCATTTGCTCTCAGCTGATATGGGATCGAGCTCTTGGATTGCCGCTGGAGAGGCCAAAGAGTGTTACAATGGAATT GCTTGAGAATCACTGCAAGAAAGCTCCTGCCAACTGA
AA sequence Show only first row Show all	>Potri.001G230500.9 pacid=42789065 polypeptide=Potri.001G230500.9.p locus=Potri.001G230500 ID=Potri.001G230500.9.v4.1 annot-version=v4.1 MVFFRSVPLLSRLRSHAQHQVQKQSNLSNSFRWIQTQTISSDLDLHSQLKELIPEQQERLKKLKSEYGKVQLGNITVDMVLGGMRGMTGLLWETSLLDPD EGIRFRGMSIPECQKLLPAAKPGGEPLPEGLLWLLLTGKVPTKEQVGALSKELRDRASVPDYVFKAIDALPVTAHPMTQFATGVMALQVQSEFQKAYEKG IHKSKYWEPTYEDSLSLIARVPIVASYIYRRIYKDGKVIPMNDSLDYGGNFSHMLGFDSPEMQELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSF AAALNGLAGPLHGLANQEVLLWIKSVVEECGENITTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLYEVVPPVLT QLGKVKNPWPNVDAHSGVLLNYYGLTEARYYTVLFGVSRSIGICSQLIWDRALGLPLERPKSVTMELLENHCKKAPAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	0	1	ATCS.2
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	2.44	0.7921
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	3.46	0.7749
AT4G14930			Survival protein SurE-like pho...		Potri.010G088000 [exp]	4.79	0.7378
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	4.89	0.7816
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.015G143700 [exp]	5.29	0.7724
AT3G10260			Reticulon family protein (.1.2...		Potri.002G055600 [exp]	6.00	0.8195
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140300 [exp]	7.07	0.8317	ZOG1.10
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120300 [exp]	8.06	0.7524
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	14.49	0.7266
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.015G080600 [exp]	14.89	0.6924

Compare expression of checked genes

Potri.001G230500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.