Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31350 352 / 2e-119 KUF1 KAR-UP F-box 1 (.1) AT1G55270 47 / 1e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 43 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 42 / 0.0005 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024000 [exp] 621 / 0 AT1G31350 330 / 1e-110 KAR-UP F-box 1 (.1) Potri.019G044000 [exp] 350 / 7e-119 AT1G31350 277 / 3e-90 KAR-UP F-box 1 (.1) Potri.018G007100 [exp] 73 / 7e-14 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 50 / 2e-06 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 49 / 4e-06 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 48 / 8e-06 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033288 [exp] 376 / 2e-128 AT1G31350 362 / 3e-123 KAR-UP F-box 1 (.1) Lus10034748 [exp] 179 / 5e-55 AT1G31350 169 / 2e-51 KAR-UP F-box 1 (.1) Lus10019425 [exp] 57 / 2e-08 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 56 / 2e-08 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 47 / 1e-05 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10042824 [exp] 43 / 0.0003 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 42 / 0.0007 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G230600.1 pacid=42792946 polypeptide=Potri.001G230600.1.p locus=Potri.001G230600 ID=Potri.001G230600.1.v4.1 annot-version=v4.1 ATGGCCAATTCCATCCAAACTTCCACCACTGACACTGCCACCAAACACCCCTCGGCCAAACGTAGAAAGCTAACCACAGACCAACACCAGAACCACCAAG AACAGCCTCTCATACCAGGTCTTACTGACCACGTAGCCCAACTTTCCCTCTCCCTTGTCCACCCTTCTACACTTTACCCTGTTTGCCACTCATGGCGTCG CCTAATCTACTCCCTTTCTTTCCCTCCTTTTCTATCTCTCTACGCGGTTTTATCATCAACAAATATAAATCACCGCCTTTCCAATAACAATCCAATCCAA TCCTTCAACTTTGACCCCATTTCTTCTAAATGGGATTCTCTCCCTCCTCCACCACCAGACCCACCACTCCATCTCCTTCTCCGCCACCCTTGCTTCATCT CCCGTGACCTTCCTATCCAATCCATCTCTGCTTGTGGTCGCTTGATACTTATTGCTGCTACTTCTCACAATTTTTCCCCAGCTCTCTCTCGCCCTCTTGT TTTTAATCCACTCTCAGGCGTATGGGGCTTTGGCCCCCCACTCACCACACCTCGCCGCTGGTGTGCTGCAGGCTCAGCAAAGGACACGGTCTATGTGGCG AGTGGGATCGGATCCCAGTTCAACACGGACGTGTCCAAGTCAGTAGAGAAGTGGGATTTGCAAAGCAAGAACGTCGGGATCTCCACCATCGCCAATAAAA CAATTACATGGAAATGGGAAAAGGTTAAAGGACTAAAAGATGGGAGATTTTGTAGGGATGCTATCGATGCAGTGGGGTGGAGAGGGAAACTTTGTATGGT GAACATGAAAGGAGATGCACCTAAAGAAGGGCTTGTTTATGACACTGAGAAAGACGCATGGGAGAACATGCCAGAGGGTATGCTTGCAGGGTGGAGAGGA CCCGTGGCATCCATGGATGAAGAGACTATGTTTGTGGTGGATGAAGCCAGGGGTGTGCTTAGAAAGTATGATCCAGAAAAGGATTATTGGGAGCATATGA TGGAGTCAGAAAGGCTTGTTGGAGCACAGAAGATTGCTGCTGGTGGCGGTAGAGTTTGTGTTATTCGCGGCTGTAGTACTGAGATTGTGGTGCTAGATGT GGCGGCGCTTCCGGTGAAACTATGGGTGGTGAAAACGCCACCGGGATTTGAAGCCTTGGCAATTCATATTTTGCCAAGGATGAGCCGGCCAGATTTTTGA
AA sequence Show only first row Show all	>Potri.001G230600.1 pacid=42792946 polypeptide=Potri.001G230600.1.p locus=Potri.001G230600 ID=Potri.001G230600.1.v4.1 annot-version=v4.1 MANSIQTSTTDTATKHPSAKRRKLTTDQHQNHQEQPLIPGLTDHVAQLSLSLVHPSTLYPVCHSWRRLIYSLSFPPFLSLYAVLSSTNINHRLSNNNPIQ SFNFDPISSKWDSLPPPPPDPPLHLLLRHPCFISRDLPIQSISACGRLILIAATSHNFSPALSRPLVFNPLSGVWGFGPPLTTPRRWCAAGSAKDTVYVA SGIGSQFNTDVSKSVEKWDLQSKNVGISTIANKTITWKWEKVKGLKDGRFCRDAIDAVGWRGKLCMVNMKGDAPKEGLVYDTEKDAWENMPEGMLAGWRG PVASMDEETMFVVDEARGVLRKYDPEKDYWEHMMESERLVGAQKIAAGGGRVCVIRGCSTEIVVLDVAALPVKLWVVKTPPGFEALAIHILPRMSRPDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.001G230600 [exp]	0	1
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	5.91	0.9492
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	6.00	0.9438
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G151000 [exp]	7.74	0.9346
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	9.16	0.9388
AT1G79770			Protein of unknown function (D...		Potri.001G188700 [exp]	12.84	0.9313
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.018G026500 [exp]	12.96	0.9421
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	14.49	0.9406
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	19.20	0.9367
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	19.36	0.9420
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.013G039400 [exp]	22.71	0.9290

Compare expression of checked genes

Potri.001G230600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.