Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31955 459 / 2e-161 CNX2 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024100 [exp] 584 / 0 AT2G31955 610 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006989 [exp] 474 / 2e-167 AT2G31955 603 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3) Lus10008908 [exp] 466 / 4e-164 AT2G31955 605 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily CL0036 [poplar] [flax] PF06463 [poplar] [flax] Mob_synth_C Molybdenum Cofactor Synthesis C
Representative CDS sequence Show only first row Show all	>Potri.001G230604.1 pacid=42789969 polypeptide=Potri.001G230604.1.p locus=Potri.001G230604 ID=Potri.001G230604.1.v4.1 annot-version=v4.1 ATGATGAGGCCGTCTGCTTCAAAATTTATTAATTGGCTCTTGGGTTTGAAGAATTCCAGTCCCTCCATGGTTGATTGTGAGGTTGGATCTTATTCTGCAT CCAGAAAGAGCAAATGTCAAGGTTCTTTTAGCGGCCATCTTAATGGTTCCTTGACAAAGGCGTATACAACTTCATGTGCTAAGTTGTCAGAAGATCCACA GAGCACTAATCTCACTTCTGAAATGTTAATTGATTCATTTGGGAGGATGCACACTTACTTGAGGATCTCCTCGACAGATCGTCGCAATCCACATTGTCAA TACTGTATGCCAACTGAGGGTGTGGAGCTCACTCCTAGCCCTCAATTACTCTCGCAGAATGAGATTGTTCATTTGGCAAATCTCTTTGTAAGCTCTGGAG TAGATAAAATTCGTTTGACTGGTGGTGAGCCAACCATTAGAAAAGGACTAAAGCCATTGGCCATGGCAGCCAATGGAATCACTCTTCCGAGAAAACTTCC AGAGCTGAAAGAATGCGGGCTTACTTCTGTAAATATCAGCTTAGACACATTGGTCCCGGCAAAATTTGAATTTTTGACCAGGCGGAAAGGGCATGAAAGA GTTGTGGATTCAATTAATACTGCTGTGGACTGTGGGTACAATCCAGCAAAAGTGAATTGTGTGGTGATGCGTGGGTTTAACGATGATTATATTTGTGATT TTGTGGAGTTGACACGTGACAAACCAATTAATGTTCGGTTTATTGAGTTCATGCCTTTTGATGGAAATGGGAAGCTGTTTCCTGGCCTAAAGAGACTGCA GGATCACCCTGCTGATACAGCCAAGAACTTCAGGATGGCTGGGCATATTGGAACGGTTTCTTTTATCACCTCAATGACTGAGCATTTCTGTGCTGGTTGC AATAGATTGCGACTTTTAGCTGATGGAAACTTTAAAGTATGCCTCTTTGATCCTTCAGAGGTTAGCTTGGGAGATCCCCTTCGGTCGAGATCAAGAAGAA AAAAAGCTTCACATGCCGGGATGTTTGACATTGCAAAAACGGTGAATAGGCCAATGATACATATAAGTGGCCAAGGCCTGGCGTATGGAAATGTTTACTG CATTATTTATTCAGATCGGTCCAACTCCATTGTCGGTGAATTTTTTTTTCTCTTAAAGTTGCTTTCAACCTCAAAAAACTAG
AA sequence Show only first row Show all	>Potri.001G230604.1 pacid=42789969 polypeptide=Potri.001G230604.1.p locus=Potri.001G230604 ID=Potri.001G230604.1.v4.1 annot-version=v4.1 MMRPSASKFINWLLGLKNSSPSMVDCEVGSYSASRKSKCQGSFSGHLNGSLTKAYTTSCAKLSEDPQSTNLTSEMLIDSFGRMHTYLRISSTDRRNPHCQ YCMPTEGVELTPSPQLLSQNEIVHLANLFVSSGVDKIRLTGGEPTIRKGLKPLAMAANGITLPRKLPELKECGLTSVNISLDTLVPAKFEFLTRRKGHER VVDSINTAVDCGYNPAKVNCVVMRGFNDDYICDFVELTRDKPINVRFIEFMPFDGNGKLFPGLKRLQDHPADTAKNFRMAGHIGTVSFITSMTEHFCAGC NRLRLLADGNFKVCLFDPSEVSLGDPLRSRSRRKKASHAGMFDIAKTVNRPMIHISGQGLAYGNVYCIIYSDRSNSIVGEFFFLLKLLSTSKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	0	1
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	1.41	0.7881
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.017G039301 [exp]	6.48	0.7786
					Potri.015G116300 [exp]	8.24	0.7706
AT4G32480			Protein of unknown function (D...		Potri.004G044300 [exp]	8.36	0.7663
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	10.09	0.7607
AT1G74150			Galactose oxidase/kelch repeat...		Potri.013G008200 [exp]	13.67	0.7372
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.010G107900 [exp]	15.49	0.7281	Pt-CABP1.2
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	16.97	0.7249
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	21.21	0.7305
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.003G151300 [exp]	27.16	0.6837

Compare expression of checked genes

Potri.001G230604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.