Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44340 79 / 1e-18 VQ motif-containing protein (.1) AT3G58000 72 / 3e-16 VQ motif-containing protein (.1) AT2G42140 68 / 1e-14 VQ motif-containing protein (.1) AT3G60090 66 / 4e-14 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024200 [exp] 189 / 1e-62 AT3G58000 73 / 7e-17 VQ motif-containing protein (.1) Potri.016G046000 [exp] 96 / 1e-25 AT3G58000 120 / 1e-34 VQ motif-containing protein (.1) Potri.006G192100 [exp] 94 / 1e-24 AT2G42140 86 / 2e-21 VQ motif-containing protein (.1) Potri.005G057800 [exp] 39 / 0.0007 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004172 [exp] 66 / 2e-13 AT2G42140 72 / 2e-15 VQ motif-containing protein (.1) Lus10021054 [exp] 60 / 3e-11 AT2G44340 76 / 7e-17 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.001G230800.4 pacid=42787956 polypeptide=Potri.001G230800.4.p locus=Potri.001G230800 ID=Potri.001G230800.4.v4.1 annot-version=v4.1 ATGGAAGGCATAGTAAGGCCACGCTCATGTAACCCTAGTTCATCAGCTTCTTCCAAGCTAGGCATGCACAGAGAGTCACATGTAATATCACAGTTGATCA AGCCCAAAGTTCGCATAATTCACGTATTTGCACCAAAAGTTATAAAGACTGATGTTGCAAATTTTAGAGAGCTTGTTCAAAGACTCACTGGTCAACCTTG TGGAAGTGAAGGCATGATCAAGAAGAAAGCAAGAAGCAGTGCTCCAGGCAAGAGAAAGAAGACCGGTTCCTCAATATGTGAGTCAAGCAAGAAAGCGATG CAGCAGCTGCCAGAGCTAGGATTGCCTAGTTTGATGAGAGGAGAGAAACTCAGGGTGGAGGTGGAAGCAAATGAGATGTTGGGGGGTCAGAATTGTTCGA GTAACTTTAATTCCCTTGATGGGTATGGAGATTTGAAAGGTTTTGTACCTGATGTATGGATGGCGCCTGATTGA
AA sequence Show only first row Show all	>Potri.001G230800.4 pacid=42787956 polypeptide=Potri.001G230800.4.p locus=Potri.001G230800 ID=Potri.001G230800.4.v4.1 annot-version=v4.1 MEGIVRPRSCNPSSSASSKLGMHRESHVISQLIKPKVRIIHVFAPKVIKTDVANFRELVQRLTGQPCGSEGMIKKKARSSAPGKRKKTGSSICESSKKAM QQLPELGLPSLMRGEKLRVEVEANEMLGGQNCSSNFNSLDGYGDLKGFVPDVWMAPD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44340			VQ motif-containing protein (....		Potri.001G230800 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	1.00	0.9884
AT3G58000			VQ motif-containing protein (....		Potri.009G024200 [exp]	1.41	0.9787
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	2.44	0.9714	NAC021
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134300 [exp]	4.47	0.9678
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	5.91	0.9615
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.006G247700 [exp]	6.48	0.9579	Pt-WGA3.1
					Potri.003G200750 [exp]	7.07	0.9489
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	8.48	0.9550
AT1G64405			unknown protein		Potri.003G140100 [exp]	10.90	0.9396
					Potri.013G145900 [exp]	11.31	0.9408

Compare expression of checked genes

Potri.001G230800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.