Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CPSF100.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23880 1172 / 0 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT1G61010 158 / 3e-40 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 137 / 8e-34 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076000 [exp] 147 / 1e-36 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076132 [exp] 142 / 3e-35 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 141 / 7e-35 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.017G076300 [exp] 132 / 6e-32 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021705 [exp] 1212 / 0 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035061 [exp] 1187 / 0 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035763 [exp] 146 / 6e-37 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 143 / 3e-36 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10015460 [exp] 128 / 1e-30 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10040483 [exp] 52 / 2e-06 AT3G07530 548 / 0.0 unknown protein Lus10011289 [exp] 51 / 4e-06 AT3G07530 557 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [poplar] [flax] RMMBL_DRMBL PF07521 [poplar] [flax] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [poplar] [flax] P-loop_NTPase PF10996 [poplar] [flax] Beta-Casp Beta-Casp domain CL0023 [poplar] [flax] PF13299 [poplar] [flax] CPSF100_C Cleavage and polyadenylation factor 2 C-terminal CL0381 [poplar] [flax] Metallo-HOrase PF16661 [poplar] [flax] Lactamase_B_6 Metallo-beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.001G231800.1 pacid=42792895 polypeptide=Potri.001G231800.1.p locus=Potri.001G231800 ID=Potri.001G231800.1.v4.1 annot-version=v4.1 ATGGGAACATCAGTGCAAGTGACACCACTCAGCGGTGTATACAATGAAAATCCACTCTCTTACTTAGTCTCCATCGACGGTTTCAATTTCTTAATCGATT GCGGTTGGAACGATCACTTCGACCCCTCTCTTCTTCAACCTCTCTCTAAAGTTGCTTCCAAAATCGATGCAGTCCTGTTATCTTACGGTGACATGCTTCA CTTAGGCGCGTTGCCTTTTGCTATGAAACAATTCGGACTCAACGCTCCTGTTTTTTCCACTGAACCTGTTTATCGATTAGGTCTTCTCACCATGTACGAC CAGTCTTTCTCTCGCAAGGCGGTTTCGGAGTTTGATTTGTTTAGTTTAGATGATATTGATTCTGCTTTCCAGAATTTTACTAGGCTTACATACTCTCAAA ATCATCATCTTTCCGGGAAGGGAGAGGGGATTGTTATTGCGCCGCATGTGGCAGGACATTTACTGGGAGGAACTGTGTGGAAGATAACGAAAGATGGAGA GGATGTTGTTTATGCTGTTGATTTCAATCATCGAAAAGAAAGGCATTTGAATGGAACTGTTTTGGAGTCGTTCTACCGGCCTGCTGTTCTGATAACTGAT GCTTATAATGCTTTAAATAGTCAGCCTTCTAGACAGCAAAGAGACAAACAATTCCTTGAGACTATTTTAAAGACTCTAGAAGGTGGTGGAAATGTATTAC TACCTGTTGATTCTGCTGGCCGAGTTTTGGAACTTCTACTAATATTGGAACAGTTCTGGGGACAACGGTTTTTGAACTATCCCATATTCTTTCTCTCGTA TGTTTCATCAAGCACCATTGATTACATCAAAAGTTTCCTGGAGTGGATGAGTGATTCAATTGCAAAGTCTTTTGAAACTTCACGTGATAATGCTTTTCTT ATGAAACATGTGACACTTCTGATAAGCAAGGACGAATTAGATAATGCTTCAACTGGTCCAAAGGTTGTTCTAGCATCTGTGGCTAGTTTGGAAGCAGGTT TTTCTCATGATATATTTGCTGAATGGGCGGCTGATGTCAAGAATCTTGTTCTCTTTACAGAAAGGGGCCAGTTTGGCACGCTAGCTCGCATGCTTCAGGC AGATCCACCTCCAAAAGCTGTTAAAATGACCATGTCAAGGAGGGTTCCCCTGGTTGGGGATGAGTTAATTGTTTATGAAGAAGAGCAAAAGCGGTTGAAA AGGGAAGAGGAACTCAAAGCTAGTCTGATCAAAGAGGAGGAATCAAAAGTGTCTCATGGGCCTGACAACAATTTGAGTGATCCAATGGTCATTGATTCTG GCAACACACATTCTCCACTGGATGTGGTTGGTTCACGTGGGAGTGGACACCGGGACATCTTAATTGATGGATTTGTTCCTCCATCCACCAGTGTTGCTCC AATGTTTCCATTCTATGAGAATAGCTTAGAGTGGGATGAATTTGGTGAAGTCATAAATCCTGATGATTATGTAGTTCAGGATGAAGACATGGACCAAGCA GCTATGCATGTTGGTGCGGATATTGATGGAAAACTTGATGAAGGGTCTGCTAGTTTGATACTTGATACAAAGCCATCAAAAGTTGTCTCGAATGAACTGA CAGTGCAAGTGAAGTGTTCATTGATTTACATGGACTATGAAGGGCGTTCTGATGGACGCTCAATTAAATCCATTCTTACCCATGTGGCACCCTTGAAGCT TGTTATGGTGCATGGATCAGCTGAGGCCACAGAACACTTGAAGCAGCATTTCCTAAATATAAAGAATGTCCAGGTTTATGCTCCCCAAATTGAAGAGACA ATTGATGTTACCTCTGATTTGTGTGCATACAAGGTGCAACTTTCAGAGAAGCTGATGAGTAATGTGCTTTTTAAAAAGTTGGGAGACTATGAAGTAGCGT GGGTTGATGCTGAGGTAGGGAAGACAGAGAATGGTATGCTGTCATTACTGCCCATCTCATCTCCAGCCCCTCCACATAAATCTGTTCTTGTTGGTGACTT GAAAATGGCGGATTTCAAACAGTTTCTAGCCAGCAAGGGCGTTCAGGTAGAATTTGCTGGCGGGGCATTGCGATGTGGAGAGTATGTGACACTGCGTAAA GTTGGGAATCCAAGCCAAAAGGGTGGCGCTTCTGGCACTCAACAAATTATCATTGAAGGTCCTTTATGTGAAGATTATTATAAGATACGTGAGTATCTAT ATTCACAGTTTTATTTGCTTTAA
AA sequence Show only first row Show all	>Potri.001G231800.1 pacid=42792895 polypeptide=Potri.001G231800.1.p locus=Potri.001G231800 ID=Potri.001G231800.1.v4.1 annot-version=v4.1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLLSYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYD QSFSRKAVSEFDLFSLDDIDSAFQNFTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKERHLNGTVLESFYRPAVLITD AYNALNSQPSRQQRDKQFLETILKTLEGGGNVLLPVDSAGRVLELLLILEQFWGQRFLNYPIFFLSYVSSSTIDYIKSFLEWMSDSIAKSFETSRDNAFL MKHVTLLISKDELDNASTGPKVVLASVASLEAGFSHDIFAEWAADVKNLVLFTERGQFGTLARMLQADPPPKAVKMTMSRRVPLVGDELIVYEEEQKRLK REEELKASLIKEEESKVSHGPDNNLSDPMVIDSGNTHSPLDVVGSRGSGHRDILIDGFVPPSTSVAPMFPFYENSLEWDEFGEVINPDDYVVQDEDMDQA AMHVGADIDGKLDEGSASLILDTKPSKVVSNELTVQVKCSLIYMDYEGRSDGRSIKSILTHVAPLKLVMVHGSAEATEHLKQHFLNIKNVQVYAPQIEET IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTENGMLSLLPISSPAPPHKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRK VGNPSQKGGASGTQQIIIEGPLCEDYYKIREYLYSQFYLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Potri.001G231800 [exp]	0	1	Pt-CPSF100.2
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.013G081300 [exp]	10.00	0.6695
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	12.36	0.7148
AT5G50350			unknown protein		Potri.012G094200 [exp]	18.97	0.6251
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.015G145600 [exp]	21.49	0.5710
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	28.58	0.5717	Pt-DDB1.1
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.004G103800 [exp]	41.73	0.5348
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	48.57	0.5842
AT1G63940		MDAR6	monodehydroascorbate reductase...		Potri.001G099600 [exp]	59.59	0.5320
AT5G04320			Shugoshin C terminus (.1.2)		Potri.010G229100 [exp]	62.35	0.5426
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.018G018100 [exp]	98.66	0.5417

Compare expression of checked genes

Potri.001G231800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.