Plant FIBer expression Database

Potri.001G232100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60070 649 / 0 Major facilitator superfamily protein (.1)
AT2G44280 644 / 0 Major facilitator superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G024600
[exp]
802 / 0 AT2G44280 653 / 0.0 Major facilitator superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034394
[exp]
618 / 0 AT3G60070 592 / 0.0 Major facilitator superfamily protein (.1)
Lus10019162
[exp]
453 / 3e-158 AT2G44280 399 / 7e-137 Major facilitator superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF13347 MFS_2 MFS/sugar transport protein
Representative CDS sequence
>Potri.001G232100.1 pacid=42792216 polypeptide=Potri.001G232100.1.p locus=Potri.001G232100 ID=Potri.001G232100.1.v4.1 annot-version=v4.1
ATGAGGAATGATGTTGAAAACGATGATGATGATGATTCGTACCCTAAGCCTGTCGGAAGACGGTGTGTTTTCTATTACGGCGTCGGTCATATGCTCAACG
ACATCACAGCTGCCTGTTGGTTTACTTATCTTCTACTGTTCTTGACGGAAATTGGACTATCCCCGAGGGATGCTGCTATAGCTATGCTTGCAGGTCAGAT
AGCTGATGGTTTTGCTACTGTATTTGCTGGAGAACTGATAGACAGGTTTGGACATTTCAAAGTATGGCATGGTGCAGGATCTATCTTGGTTGCAATCTCA
TTTTCTTCAGTTTTTGGCGGTTGCTTGCCATGCAAAATCTTGGCTTCCTGTTCGTCCGTAGTAGAAACTGTTTCATACAGCACGTCTGCTGCAATCTTCA
ATGTGGGTTGGGCTGCCACCCAAGTTTCACACATGTCGATGGTGAATTGCATTTCATTGAATTCATCAAGCAGGGTGGTAATGACAAGCTGTCGGAATGC
TTTTACAATGGTTGCAAACCTCAGTCTTTATGCTGTCGCACTAGTAGTATTCAGTTCCATTAAAGCAACAACTCATGCGGATATTGAAAATCAGTACCGC
TGGATTGCGTATACATCAATTTTTATTGGATGCTGCTTTGTGGGAATATTTCATCTTGGCACTAAAGAGCCAAGGTTAAAGATATGCGTACATGGAACTA
GTAATGCAAGGATATCATGGGCATACTGGTTCAAGAAAGTTTTATACTATCAAGTTGGTCTTGTCTATATGCTTACCAGACTTGTACAAAATGTTTCACA
GGTATATCTTGCATTCTATGTTATGGATGATTTGCAGATGGCCAAGTCAGCTAAAGCTTTGGTTCCTGCAATGATCTATATGAGCAGCTTCTTTGTATCT
GTCATTATGCAGGAAATGTCATGGACTGGCCAACGCCTGAAAGCCTACTATTCTGCTGGTGGCATTCTCTGGGTATTCTGTGGGGCAGGCATCCTCTTTT
TACCTAGAAACATGAGTGCTTTCATGTACGTCATATCAGTACTTATTGGGATAGCAAATGCTCTAATGACGGTAACTGGAGTAAGCATGCAAAGTATTCT
AGTTGGTTCAGATCTAAATGGCTGTGCATTTGTTTATGGATCTTTGAGTTTCCTAGACAAGATTTCATGTGGGCTTGCTGTCTTTGCCCTTCAGTCTTTT
CAGAGCTCCTCACCGAAAACAGAGGAAGCCCTTTCTACAGATTATTTTTCAGTCACAAGATATGGCTTGGGTCTACTTCCAGCTGTTTGTTCACTTGCTG
GGGTGGCTATTACATACACTATGAAACTCCAGACACAGGATTCAAAATCCTTGATGGAACCGCTGCTGGAATGA
AA sequence
>Potri.001G232100.1 pacid=42792216 polypeptide=Potri.001G232100.1.p locus=Potri.001G232100 ID=Potri.001G232100.1.v4.1 annot-version=v4.1
MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIAMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAIS
FSSVFGGCLPCKILASCSSVVETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVALVVFSSIKATTHADIENQYR
WIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISWAYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAMIYMSSFFVS
VIMQEMSWTGQRLKAYYSAGGILWVFCGAGILFLPRNMSAFMYVISVLIGIANALMTVTGVSMQSILVGSDLNGCAFVYGSLSFLDKISCGLAVFALQSF
QSSSPKTEEALSTDYFSVTRYGLGLLPAVCSLAGVAITYTMKLQTQDSKSLMEPLLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60070 Major facilitator superfamily ... Potri.001G232100
[exp]
0 1
AT4G13250 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-... Potri.018G081200
[exp]
5.83 0.9316
AT3G17000 UBC32 ubiquitin-conjugating enzyme 3... Potri.010G143900
[exp]
8.71 0.9040
AT5G16990 Zinc-binding dehydrogenase fam... Potri.007G142400
[exp]
10.58 0.8690
AT3G07700 Protein kinase superfamily pro... Potri.014G168600
[exp]
11.61 0.8990
AT2G30950 FTSH2, VAR2 VARIEGATED 2, FtsH extracellul... Potri.014G139500
[exp]
16.79 0.9070 Pt-VAR2.3
AT1G79900 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC... Potri.001G182000
[exp]
20.19 0.8544
AT1G70610 ABCB26, ATTAP1 ATP-binding cassette B26, tran... Potri.010G045900
[exp]
22.04 0.8897 ATTAP1.1
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.009G043800
[exp]
23.21 0.8954
AT5G52450 MATE efflux family protein (.1... Potri.012G051900
[exp]
23.23 0.8888
AT1G74780 Nodulin-like / Major Facilitat... Potri.015G067000
[exp]
25.57 0.8008

Potri.001G232100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.