Plant FIBer expression Database

Potri.001G232200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31930 72 / 2e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G024700
[exp]
218 / 3e-73 AT2G31930 58 / 6e-11 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G232200.1 pacid=42790204 polypeptide=Potri.001G232200.1.p locus=Potri.001G232200 ID=Potri.001G232200.1.v4.1 annot-version=v4.1
ATGGGAAGTGAGCGGTGCAATATTCCATGCAAACCCCGTTATGATATTACTATGTCCAGGAGAACAAGAAAGCCGTTCATGAATTTCGAAGAAGCCAATC
GAAATCCCACAACAGTCTCGACAGAAGAAGAGAGAGATGCTAAAGATGTTGCTGTCCATGATAAAGAAACGGAGAGCTTTCCTGCAACAGATGATGTTGA
AGAAGATCGTAAAAGCAGCCTGAAGCAACTTATAATCGACAACGCAGGCAACCAAGAAAGTGAACCCACCAAGCTGGTGCTGCAGGAAACAAGGGGCGGA
GATGATGAAAACATTGAGAGGAAATTATCAGGAAGCAGGAATTCCCTTGGCCAGCATTTCAAGGGAGAAGAAAAGCAGCTTCAATTAGTAACAATGAAAC
AAGCAAAAGAAGGAATTGAAGGAGTGAAGCTTAAGGGAATGGTGGGTCGCTATGTCAAAGTGTTAAGCCATTTGATCAGAATCAAGCGTGACACACGCAT
GAATAATGGATCTCGGAAAAAGTCACTTCTCCGGTTGCCCATGTAG
AA sequence
>Potri.001G232200.1 pacid=42790204 polypeptide=Potri.001G232200.1.p locus=Potri.001G232200 ID=Potri.001G232200.1.v4.1 annot-version=v4.1
MGSERCNIPCKPRYDITMSRRTRKPFMNFEEANRNPTTVSTEEERDAKDVAVHDKETESFPATDDVEEDRKSSLKQLIIDNAGNQESEPTKLVLQETRGG
DDENIERKLSGSRNSLGQHFKGEEKQLQLVTMKQAKEGIEGVKLKGMVGRYVKVLSHLIRIKRDTRMNNGSRKKSLLRLPM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31930 unknown protein Potri.001G232200
[exp]
0 1
AT1G17950 MYB AtMYB52, BW52, ... myb domain protein 52 (.1) Potri.015G033600
[exp]
1.41 0.9359 MYB.38,MYB090
AT5G59350 unknown protein Potri.008G054400
[exp]
2.44 0.9208
Potri.012G034400
[exp]
3.00 0.8605
AT5G57200 ENTH/ANTH/VHS superfamily prot... Potri.018G142800
[exp]
3.31 0.8535
AT3G53260 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 ... Potri.010G224100
[exp]
4.89 0.8522 PAL.3
AT5G51670 Protein of unknown function (D... Potri.012G129900
[exp]
5.29 0.8505
AT5G42710 unknown protein Potri.002G261700
[exp]
6.32 0.8881
AT4G29230 NAC ANAC075, NST9 NAC domain containing protein ... Potri.018G068700
[exp]
8.12 0.8714
AT5G11730 Core-2/I-branching beta-1,6-N-... Potri.018G059100
[exp]
11.09 0.8066
AT3G22790 Kinase interacting (KIP1-like)... Potri.010G083300
[exp]
13.26 0.8484

Potri.001G232200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.