Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) AT5G59790 105 / 8e-25 Domain of unknown function (DUF966) (.1) AT3G46110 103 / 9e-25 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 106 / 1e-24 Domain of unknown function (DUF966) (.1) AT5G10150 89 / 4e-19 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024900 [exp] 593 / 0 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 101 / 7e-23 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 100 / 1e-22 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 99 / 3e-22 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 96 / 3e-21 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 94 / 1e-20 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 88 / 3e-19 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 87 / 3e-19 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003921 [exp] 162 / 1e-45 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 163 / 3e-45 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 103 / 7e-24 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 102 / 9e-24 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 102 / 4e-23 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 102 / 5e-23 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 101 / 6e-23 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 99 / 3e-22 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 80 / 2e-16 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 79 / 3e-16 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [poplar] [flax] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Potri.001G232300.12 pacid=42792915 polypeptide=Potri.001G232300.12.p locus=Potri.001G232300 ID=Potri.001G232300.12.v4.1 annot-version=v4.1 ATGGAAGTATCATCAGGAATACCCACAAGCTGCAGCAGCAGCGGGGCTGGAGCTGGAGAAGTGAGACGTATTCATATCATTTACTTTCTCAGCCATAACT TGGGCCGTATTGATCAGCATCCTCATCTCATTCGTGTCCATCATTCTAATCGAAATGGTGTTTATCTAAGAGATGTCAAGAGGTGGCTTGCGGACTTGCG AGGAAAAGACATGCCAAAAGCCTTTGCTTGGTCCTATAAGAGGAGATACAAGAAAGGTTATGTTTGGCAAGATTTACTTGATGATGATCTTATTACCCCA ATCTCTGACAATGAATATGTCCTCAAAGGATCTGAAATTTTAGCCCCTCCTGCTAATCCCTTTGTGCTTGAAAATGATACAGTTGGTAGTGCAGATGGTG AAAAGCAAGAGAATACTGGAGTTGAATTAGTTGAAAACAAAGCACAGAATCATGAGCAACGCCCTTCACCAAACCAAATTTGTAAAGACACTACCTCAAG AAATACATCATCAACTGAGATACCTAAAGAATCACCTACATTCACCTCAGAGATTTCTACAGTGACTGACGATTCCATCGAAGAAGAAGAAGAAGAAGAA GAGGATGCATGCAAACGCAACAACTCTCGTGACCAAGAACAGATAGATAATAAGGTGGAACATTCACCCTTTTACACCATTTTTCTGGGCAAGAGCAAGA AAAACCAAGACGAGAGGAAAGACAACACCAGCAGCATCGAAAAGATGGGCACCCCAAGTTCATTCCCCTCCCCATCATCATCACAATCTACATTTGCAAG GAGTAAGAGCTATTCAACTGGAACATCCAAGGTGCTACGTAATTTGATTACATGTGGTGCTGTTGATACAAATGATGCCGCATTGGTTCTCCAAAGCCAA AAAAACAAAAATAAATACAAGCCAATCGACAAGCCGGCTGGTCATATTTGTAAAGGAGAAGAACTTGGAGGGTCTGCCAGAGTTTTTGGTACTCCTTGGA ATCAAGTCCAACAACAACGGCAACACAATACTGCTATTGCTAGCAGGAAAAGCTTTGACGGGGCGAGAAGTTCAAAGAAGCAGCATAATGGATTTGGCAG TCCAAAAGTGGTTTCTCCTGCATACAAGCCAGTGGCTGTACCCACCTGCTCGCAGTGTGGGAAGTCATTCAGGCCAGAGAAATTGCACTCGCACATGAAG TCTTGCAGGGGATTGAAGGTCCTGGCAAAAGCTGCTTCGACTTATGTTGAGAAAACACCATCACCTTCACATAACCCAGTTGATTCAGCATCTGGGGATG GCTATTTCTTGACCAACTGA
AA sequence Show only first row Show all	>Potri.001G232300.12 pacid=42792915 polypeptide=Potri.001G232300.12.p locus=Potri.001G232300 ID=Potri.001G232300.12.v4.1 annot-version=v4.1 MEVSSGIPTSCSSSGAGAGEVRRIHIIYFLSHNLGRIDQHPHLIRVHHSNRNGVYLRDVKRWLADLRGKDMPKAFAWSYKRRYKKGYVWQDLLDDDLITP ISDNEYVLKGSEILAPPANPFVLENDTVGSADGEKQENTGVELVENKAQNHEQRPSPNQICKDTTSRNTSSTEIPKESPTFTSEISTVTDDSIEEEEEEE EDACKRNNSRDQEQIDNKVEHSPFYTIFLGKSKKNQDERKDNTSSIEKMGTPSSFPSPSSSQSTFARSKSYSTGTSKVLRNLITCGAVDTNDAALVLQSQ KNKNKYKPIDKPAGHICKGEELGGSARVFGTPWNQVQQQRQHNTAIASRKSFDGARSSKKQHNGFGSPKVVSPAYKPVAVPTCSQCGKSFRPEKLHSHMK SCRGLKVLAKAASTYVEKTPSPSHNPVDSASGDGYFLTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05577			Domain of unknown function (DU...		Potri.001G232300 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.001G453100 [exp]	1.41	0.9459
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.002G047000 [exp]	3.00	0.9290	PtrAMT4-1
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G201000 [exp]	8.94	0.9284
					Potri.013G045700 [exp]	13.78	0.9116
					Potri.016G002900 [exp]	17.49	0.8764
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131200 [exp]	18.57	0.9055
AT2G40070			unknown protein		Potri.010G177000 [exp]	28.14	0.9093
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	28.28	0.9053
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	29.46	0.8955
					Potri.018G119400 [exp]	31.49	0.9166

Compare expression of checked genes

Potri.001G232300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.