Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05590 798 / 0 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) AT3G55260 239 / 2e-71 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 228 / 1e-67 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232800 [exp] 1119 / 0 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.010G211000 [exp] 229 / 8e-68 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.008G079400 [exp] 225 / 3e-66 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.008G049801 [exp] 44 / 2e-05 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007899 [exp] 737 / 0 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10030348 [exp] 736 / 0 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10003292 [exp] 211 / 2e-60 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 211 / 3e-60 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 145 / 7e-37 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00728 [poplar] [flax] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain CL0546 [poplar] [flax] Hexosaminidase PF14845 [poplar] [flax] Glycohydro_20b2 beta-acetyl hexosaminidase like
Representative CDS sequence Show only first row Show all	>Potri.001G232600.1 pacid=42792995 polypeptide=Potri.001G232600.1.p locus=Potri.001G232600 ID=Potri.001G232600.1.v4.1 annot-version=v4.1 ATGACGAGTAACTTGGTAATAAGCAGCCGCTGTTCCTTATTCTTAACGTTGTTTTACTTGCTGGTTAGTGCCTCCCTTACAGCAACATCAGCTCAATGGG TATGGCCGAAGCCAAGAACCCTGTCTTGGCCGATCCCACTCGCCACTATTCTCTCCCCAAACTTCACTATCTCCTCCCCCTACCACCAACATCTCTCCCC AGCCGTTAACCGTTACCGCCTCCAAATCCTCACGGAACACCACCTCCCTCTCGTTCCTCCCCCATTCAACCTCTCCAACTCATCCCCTCCTTTGCAGGCC CTGACCATCACTGTCAAAGACCTCGCCGCCCCACTCCAACACTCCGTTGACGAGTCCTACGCCCTTGCCATCCCCACTGCTAGCTCCACCGCCAATCTGA CGGCCGAGACTGTATGGGGCGCAATGAGGGGTCTGGAGACGTTTTCTCAACTGGTTTGGGGATTGAAACCATTGCTTGTCCCTGTTGGGCTCGACGTGTG GGACTCGCCTCTGTTTGAGCATAGAGGGATCATTTTGGATACCTCTAGGAATTACTACCCAGTGGATGACATTTTGAGGACCATCAAAGCCATGAGTGCT AATAAGCTCAACGTTTTCCATTGGCACATTACCGATTCTCACTCTTTTCCTTTAGTGCTTCCATCTGAGCCTGCTCTTGCTGACAAAGGGTCTTATGGGA ATGACATGCTCTACTCTCCAGCTGATGTTGCAACAATTGTTCGGTTTGGTTTGGAGCATGGCGTCAGGGTACTACCGGAAATTGATTCTCCAGCACATAC AGGATCGTGGGCTGAAGCCTATCCAGATATCGTGACTTGCGCAAACATGTTCTGGTGGCCGGCTGAAAGCAAATGGGCTGACCGGCTTGCATCAGAACCA GGAACTGGCCAGCTAAATCCTTTGAACCCAAATACCTACCAAGTTCTAAAAAATGTGATTGGTGATGCAGTTGCCTTGTTTCCTGAACCGTTTTTCCATG CTGGAGGTGATGAGATCATCCCAGGCTGTTGGAAAGCTGACCCGGCCATTCAGTCCTTCCTATCCAAAAATGGAACTCTCAGTCAACTCCTTGAGAAATT TGTGAACTCAACCTTCCCTTACATTGTGTCCCTCAATCGCACGGTGGTTTACTGGGAAGATATTTTGTTGGATGCCAATGTCAAGGTGGACCCTTCATTT CTTCCACCTGAGCATACCATCCTACAGACATGGAATAACGGTCCCAACAACACGAAACTGATTGTTTCTTCTGGTTACAGAGCTATTGTCTCATCCTCAG AGTTTTATTATTTGGATTGTGGACATGGTGGTTTTCTTGGGAATGACAGCCAATATGATCCACCACCAACAAGTGGTGGCAGTGGCAATGGTGGATCATG GTGTGCACCTTTCAAAACATGGCAAACCATATATAACTATGACATAGCATATGGATTGACTCCGGAGGAGACCAAATTGGTGCTAGGGGGTGAAGTAGCA TTATGGTCAGAGCAAGCAGATCCAACAGTTTTGGACGTGCGGATTTGGCCAAGAGCTTCAGCAATGGCTGAGACTTTATGGTCAGGGAACAGAGATGAGT CAGGCAAGAAGAGGTATGCAGAGGCAATGGATCGTTTAAATGAGTGGAGACATAGAATGGTCAACAAAGGAATCAGAGCTGAACCACTGCAGCCTCTCTG GTGCATCAAGAACCCTGGCATGTGCAACACAGTTCATCCAAGTGATTAG
AA sequence Show only first row Show all	>Potri.001G232600.1 pacid=42792995 polypeptide=Potri.001G232600.1.p locus=Potri.001G232600 ID=Potri.001G232600.1.v4.1 annot-version=v4.1 MTSNLVISSRCSLFLTLFYLLVSASLTATSAQWVWPKPRTLSWPIPLATILSPNFTISSPYHQHLSPAVNRYRLQILTEHHLPLVPPPFNLSNSSPPLQA LTITVKDLAAPLQHSVDESYALAIPTASSTANLTAETVWGAMRGLETFSQLVWGLKPLLVPVGLDVWDSPLFEHRGIILDTSRNYYPVDDILRTIKAMSA NKLNVFHWHITDSHSFPLVLPSEPALADKGSYGNDMLYSPADVATIVRFGLEHGVRVLPEIDSPAHTGSWAEAYPDIVTCANMFWWPAESKWADRLASEP GTGQLNPLNPNTYQVLKNVIGDAVALFPEPFFHAGGDEIIPGCWKADPAIQSFLSKNGTLSQLLEKFVNSTFPYIVSLNRTVVYWEDILLDANVKVDPSF LPPEHTILQTWNNGPNNTKLIVSSGYRAIVSSSEFYYLDCGHGGFLGNDSQYDPPPTSGGSGNGGSWCAPFKTWQTIYNYDIAYGLTPEETKLVLGGEVA LWSEQADPTVLDVRIWPRASAMAETLWSGNRDESGKKRYAEAMDRLNEWRHRMVNKGIRAEPLQPLWCIKNPGMCNTVHPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232600 [exp]	0	1
AT1G77290			Glutathione S-transferase fami...		Potri.005G182000 [exp]	1.73	0.8956
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	2.82	0.8796
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	6.70	0.8721
AT1G32730			unknown protein		Potri.001G148500 [exp]	8.48	0.8624
AT1G27090			glycine-rich protein (.1)		Potri.010G034900 [exp]	9.53	0.8587
AT1G32260			unknown protein		Potri.003G095600 [exp]	12.36	0.8567
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	13.49	0.8533	Pt-ATTIM23.1
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.001G271300 [exp]	14.49	0.8530	Pt-GFA2.2
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	15.55	0.8353
					Potri.002G208200 [exp]	16.73	0.8580

Compare expression of checked genes

Potri.001G232600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.