Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05590 795 / 0 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) AT3G55260 239 / 1e-71 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 229 / 8e-68 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232600 [exp] 1118 / 0 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.010G211000 [exp] 231 / 2e-68 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.008G079400 [exp] 226 / 7e-67 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.008G049801 [exp] 44 / 2e-05 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007899 [exp] 751 / 0 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10030348 [exp] 750 / 0 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10003292 [exp] 215 / 6e-62 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 215 / 9e-62 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 148 / 1e-37 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00728 [poplar] [flax] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain CL0546 [poplar] [flax] Hexosaminidase PF14845 [poplar] [flax] Glycohydro_20b2 beta-acetyl hexosaminidase like
Representative CDS sequence Show only first row Show all	>Potri.001G232800.1 pacid=42791609 polypeptide=Potri.001G232800.1.p locus=Potri.001G232800 ID=Potri.001G232800.1.v4.1 annot-version=v4.1 ATGACGAGTAACTTGGTAATAAGCAGCCGCTGTTCCTTATTCTTAACGTTGTTTTACTTGCTGGTTAGTGCCTCCCTTACAGCAACATCAGCTCAATGGG TATGGCCGAAGCCAAGAACCCTGTCTTGGCCGATCCCACTCGCCACTATTCTCTCCCCAAACTTCACTATCTCCTCCCCCTACCACCAACATCTCTCCCC TGCAGTCAACCGTTACCGCCTCCAAATCCTCACGGAGCACCACCGCCCTCTCGTTCCTCCCCCAGTCAACCTCTCCAACTCGTCCCCTCCTTTGCAGGCC CTGACCATCACTGTCAAAGACCTCTCCGCCCCACTCCAACACTCCGTTGACGAGTCCTACGCCCTTGCCATCCCCACTGCTAGCTCCACCGCCAATCTGA CGGCCGAGACTGTATGGGGCGCCATGAGGGGTCTGGAGACGTTTTCTCAACTGGTCTGGGGATTGAAACCATTGCTTGTTCCTGTTGGGCTCGACGTGTG GGACTCGCCTCTGTTTGAGCATAGAGGGATCATGTTGGATACCTCTAGGAATTACTACCCAGTGGATGACATTTTGAGGACCATCAAAGCCATGAGTGCT AATAAGCTCAACGTTTTCCATTGGCACATTACCGATTCTCACTCTTTTCCTTTAGTGCTTCCATCCGAGCCTGCTCTTGCTGACAAAGGGTCTTATGGGA ATGACATGCTCTACTCTCCAGCTGATGTTGCAACAATTGTTCGGTTTGGTTTGGAGCATGGCGTCAGGGTTCTACCGGAAATTGATTCTCCAGCACATAC AGGATCGTGGGCTGAAGCCTATCCAGATATCGTGACTTGCGCAAACATGTTCTGGTGGCCGGCTGAAAGCGAATGGGCTGACCGGCTCGCATCAGAACCA GGAACTGGCCAGCTAAATCCTTTGAACCCAAATACCTACCAAGTTCTAAAAAATGTGATTGGTGATGCAGTTGCCTTGTTTCCTGAACCGTTTTTCCATG CTGGAGGTGATGAGATCATCCCAGGCTGTTGGAAAGCTGACCCGGCCATTCAGTCCTTCCTATCCAAAAATGGAACTCTCAGTCAACTCCTTGAGAAATT TGTGAACTCAACCTTCCCTTACATTGTGTCCCTCAATCGCACGGTGGTTTACTGGGAAGATATTTTGTTGGATGCCAATGTCAAGGTGGGCCCTTCATTT CTTCCACCTGAGCATACCATCCTACAGACATGGAATAACGGTCCCAACAACACGAAACTGATTGTTTCTTCTGGTTACAGAGCTATTGTCTCATCCTCAG AGTTTTATTATTTGGATTGTGGCCATGGCGATTTTCCTGGGAATGACAGCCAATATGATCCACCACCAACAAGTGGTGACAGTGGCAATGGTGGATCATG GTGTGGACCTTTCAAAACATGGCAAACTATATATAACTATGACATAGCATATGGATTGACTCCGGAGGAGACCAAATTGGTGCTAGGGGGTGAAGTAGCA TTATGGTCAGAGCAAGCAGACCCAACAGTTTTGGACGTGCGGATTTGGCCAAGAGCTTCAGCAATGGCTGAGACTTTATGGTCAGGGAACAGGGATGAGT CAGGAAAGAAGAGATATGCAGAGGCAATGGATCGTTTAAACGACTGGAGACATAGAATGGTCAACAAAGGAATCAGAGCTGAACCACTTCAGCCTCTCTG GTGCATCAAGAACCCTGGCATGTGCAACACAGTTCATCCAAGTGATTAG
AA sequence Show only first row Show all	>Potri.001G232800.1 pacid=42791609 polypeptide=Potri.001G232800.1.p locus=Potri.001G232800 ID=Potri.001G232800.1.v4.1 annot-version=v4.1 MTSNLVISSRCSLFLTLFYLLVSASLTATSAQWVWPKPRTLSWPIPLATILSPNFTISSPYHQHLSPAVNRYRLQILTEHHRPLVPPPVNLSNSSPPLQA LTITVKDLSAPLQHSVDESYALAIPTASSTANLTAETVWGAMRGLETFSQLVWGLKPLLVPVGLDVWDSPLFEHRGIMLDTSRNYYPVDDILRTIKAMSA NKLNVFHWHITDSHSFPLVLPSEPALADKGSYGNDMLYSPADVATIVRFGLEHGVRVLPEIDSPAHTGSWAEAYPDIVTCANMFWWPAESEWADRLASEP GTGQLNPLNPNTYQVLKNVIGDAVALFPEPFFHAGGDEIIPGCWKADPAIQSFLSKNGTLSQLLEKFVNSTFPYIVSLNRTVVYWEDILLDANVKVGPSF LPPEHTILQTWNNGPNNTKLIVSSGYRAIVSSSEFYYLDCGHGDFPGNDSQYDPPPTSGDSGNGGSWCGPFKTWQTIYNYDIAYGLTPEETKLVLGGEVA LWSEQADPTVLDVRIWPRASAMAETLWSGNRDESGKKRYAEAMDRLNDWRHRMVNKGIRAEPLQPLWCIKNPGMCNTVHPSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232800 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	12.08	0.7614
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	13.49	0.7641
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.003G182100 [exp]	13.63	0.7608
AT5G10190			Major facilitator superfamily ...		Potri.007G091800 [exp]	16.94	0.7457
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	19.28	0.7508
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	19.39	0.7581
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	20.00	0.7530
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	23.32	0.7103
					Potri.001G265000 [exp]	24.49	0.7433
AT1G80010	FAR1_related	FRS8	FAR1-related sequence 8 (.1)		Potri.003G031200 [exp]	24.49	0.6998

Compare expression of checked genes

Potri.001G232800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.