Plant FIBer expression Database

Potri.001G233200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45880 404 / 5e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT3G20810 58 / 4e-09 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
AT5G19840 54 / 8e-08 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
AT5G06550 49 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G025400
[exp]
602 / 0 AT3G45880 417 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.005G215200
[exp]
57 / 7e-09 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Potri.001G016200
[exp]
54 / 9e-08 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035699
[exp]
478 / 8e-170 AT3G45880 461 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10037290
[exp]
193 / 2e-61 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10000493
[exp]
52 / 3e-07 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF13621 Cupin_8 Cupin-like domain
Representative CDS sequence
>Potri.001G233200.1 pacid=42790630 polypeptide=Potri.001G233200.1.p locus=Potri.001G233200 ID=Potri.001G233200.1.v4.1 annot-version=v4.1
ATGTTGAAGGAGGGAGAAAGATTGCTAGAAGGGCTGTGGGGGGAAGTGAGGGAGCTAAGCCTGGGAAACAGAATACAACGGCTAGACTCAGCCCCAACCC
CGCTCCAATTCCTAAGAGACTTTGTATCCCCTAACAAGCCTTGCATCATTTCTAATGCCATCTCCCACTGGCCTGCTCTCACCCGTTGGCCTAGTCTCTC
TTACCTCTCTTCCACCCTTTCCAATTCCATCGTCTCCCTTCACCTCACCCCAGATGGCCGTGCCGATTCCCTTGTTCCCCTAGAAAACCCTAAAAAAGAA
GAAATATGCTTCGCCTCTGCTCACGTGGAGCGTGTTCCTTTCCCTTGTGCACTTGATCTTGTTCTGAATCCAGAAAGAAAAAATCTGGTGGCATACCTGC
AGCAGCAGAATGACTGCTTCCGGGAAGAATATTCGGCATTGGCTTCGGACTGCGATGCCCACATCCCATGGGCGACTGAGGCACTGGGAGGCTACCTTCC
GGAGGCGGTGAATCTGTGGATTGGAAACCATTTATCTGAAACTTCATTCCACAAGGACCATTATGAGAATCTGTATGCTGTTGTTTCGGGGGAGAAGCAA
TTCTTGCTACTTCCTCCTACTGACATGCACCGCATGTACATTCAAGATTTCCCAGCTGCTCAGTATTCTTATTCCAGTGACGGTGGAGAATTTAGATTGG
AGTTGGAGAAGCCATTGAGATATGTGCCATGGTGCAGCGTGAATCCTTATCCATCTCCAGAAACTAAGGAGATTGAAATGTCTAAATTTCCTCTGTATTT
CAATGGTCCGACACCCTTTCATTGTACTGTCAAGGCTGGCGAGATTCTCTACTTGCCAAGTATGTGGTTTCATCATGTTCGACAGAGTCCAGATGACAAT
GGATGCGCTATTGCCATAAACTATTGGTATGATATGCAGTTCGACATCAAGTATGCTTATTTCAATTTCTTGCAATCAATTCATCATGGGTCAAGATTGA
TGAATTGCGATGCATCCAAGTGCACCTTAAGTGATGAACTATGTATTGATGCTAGTGAATGGGAAGCCAATCAAGAAGATACTAAAGACGGATAA
AA sequence
>Potri.001G233200.1 pacid=42790630 polypeptide=Potri.001G233200.1.p locus=Potri.001G233200 ID=Potri.001G233200.1.v4.1 annot-version=v4.1
MLKEGERLLEGLWGEVRELSLGNRIQRLDSAPTPLQFLRDFVSPNKPCIISNAISHWPALTRWPSLSYLSSTLSNSIVSLHLTPDGRADSLVPLENPKKE
EICFASAHVERVPFPCALDLVLNPERKNLVAYLQQQNDCFREEYSALASDCDAHIPWATEALGGYLPEAVNLWIGNHLSETSFHKDHYENLYAVVSGEKQ
FLLLPPTDMHRMYIQDFPAAQYSYSSDGGEFRLELEKPLRYVPWCSVNPYPSPETKEIEMSKFPLYFNGPTPFHCTVKAGEILYLPSMWFHHVRQSPDDN
GCAIAINYWYDMQFDIKYAYFNFLQSIHHGSRLMNCDASKCTLSDELCIDASEWEANQEDTKDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45880 2-oxoglutarate (2OG) and Fe(II... Potri.001G233200
[exp]
0 1
AT3G54440 glycoside hydrolase family 2 p... Potri.001G027400
[exp]
4.47 0.8144
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
4.89 0.8051
AT4G39870 TLD-domain containing nucleola... Potri.005G075800
[exp]
9.89 0.7629
AT1G10095 Protein prenylyltransferase su... Potri.013G047100
[exp]
11.09 0.7366
AT5G42920 AtTHO5 THO complex, subunit 5 (.1.2) Potri.014G028100
[exp]
13.26 0.7911
AT5G03450 Transducin/WD40 repeat-like su... Potri.006G122800
[exp]
13.74 0.7494
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Potri.013G035200
[exp]
17.40 0.7919
AT2G25920 unknown protein Potri.002G198400
[exp]
18.65 0.7473
AT5G06100 MYB ATMYB33 myb domain protein 33 (.1.2.3) Potri.001G036000
[exp]
18.97 0.7588
AT4G37740 GRF ATGRF2 growth-regulating factor 2 (.1... Potri.001G132600
[exp]
26.49 0.7651

Potri.001G233200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.