Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45770 563 / 0 Polyketide synthase, enoylreductase family protein (.1.2) AT1G23740 76 / 5e-15 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G49670 72 / 1e-13 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G61510 61 / 4e-10 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G15090 59 / 1e-09 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 54 / 7e-08 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT4G13010 53 / 1e-07 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT5G38000 51 / 5e-07 Zinc-binding dehydrogenase family protein (.1) AT5G37980 49 / 3e-06 Zinc-binding dehydrogenase family protein (.1) AT5G16970 45 / 4e-05 AT-AER alkenal reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136100 [exp] 76 / 6e-15 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 72 / 5e-14 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.009G103000 [exp] 67 / 7e-12 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.019G065700 [exp] 66 / 7e-12 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.017G002950 [exp] 63 / 7e-11 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G002500 [exp] 56 / 1e-08 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 56 / 2e-08 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 53 / 1e-07 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 53 / 1e-07 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020160 [exp] 465 / 1e-165 AT3G45770 474 / 5e-169 Polyketide synthase, enoylreductase family protein (.1.2) Lus10020161 [exp] 107 / 1e-28 AT3G45770 113 / 2e-31 Polyketide synthase, enoylreductase family protein (.1.2) Lus10030873 [exp] 72 / 2e-13 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 67 / 7e-12 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10027904 [exp] 66 / 2e-11 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 66 / 2e-11 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10003495 [exp] 63 / 9e-11 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10003691 [exp] 62 / 2e-10 AT3G56460 504 / 1e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10028988 [exp] 62 / 2e-10 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10038206 [exp] 59 / 2e-09 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G233300.1 pacid=42789656 polypeptide=Potri.001G233300.1.p locus=Potri.001G233300 ID=Potri.001G233300.1.v4.1 annot-version=v4.1 ATGGCGTTGATAATGATGAGATCGGTAGCAACGACGAGGAGAGGCTTCTTCAAACTGAAGCGGTCTTACAGTGGTATCCGGGCATTCTCATCCCTACTAA CCTCGCCGCCTTCCAAGGCCGTCGTCTACGAGCGGCATGGGCCGCCTGACGCCGTGACAAGAGTAATAGAGATGGAAGGTGTGGAAGTGAAAGAGAAGGA TGTCTGCGTCAAAATGATGGCAGCTCCAATCAATCCCTCTGATATAAATCGAATTGAAGGAGTATACCCAGTGAGGCCACCTTTGCCTGCAATTGGTGGA TATGAGGGTGTAGGAGAGGTGCTTTCTGTGGGCTCTGCAGTGAAGCACCTCTCTCCTGGCGATTGGGTCATTCCATCTCCGCCTTCTTCTGGAACGTGGC AGACTTACATTGTAAAAGAGGAGAGTGTTTGGCACAAAATCAGTAAGGATTCACCGATTGAATATGCTGCCACTATTACTGTCAATCCTTTGACTGCTTT AAGAATGCTTCAAGACTTTGTCACTCTTAATTCAGGAGATTGTATAGTGCAAAATGGGGCTACGAGCATTGTCGGGCAGTGTATCATCCAGCTTGCACGA CATCGGGGCATCCATAGTATCAATATAATAAGGGATAGGGTTGGGTCAGATGAAGCAAAGGAAATGTTGAAAAGACTAGGAGCTGACGAAGTTTTTACTG AGAGCCAATTGGAAGTGAAAAATATTAAGGGTCTTCTGACTAACTTGCCTGAACCTGCTTTGGGATTCAACTGTGTTGGTGGCAATTCGGCTTCTTTGGT TCTCAAATTCTTAAGGCATGGGGGAACAATGGTGACATATGGTGGAATGTCAAAAAAACCTATCACAACATCAACATCATCCTTCATTTTCAAGGATCTT TCCTTGAGAGGATTCTGGCTGCAGAAATTAATGAATTCAGATAAAGTTAATGAATGTAGAAATTCGATTGACCATCTTCTTTGCCTAGCACGAGAAGGGA AGTTGAAATATGAAATGGAGTTGGTCTCTTTTGGTGATTTTCATACTGCATTGGATAAAGCACTGGGAAAGCTGGGGAGCCAACCCAAACAGGTATTAAA ATTCTAA
AA sequence Show only first row Show all	>Potri.001G233300.1 pacid=42789656 polypeptide=Potri.001G233300.1.p locus=Potri.001G233300 ID=Potri.001G233300.1.v4.1 annot-version=v4.1 MALIMMRSVATTRRGFFKLKRSYSGIRAFSSLLTSPPSKAVVYERHGPPDAVTRVIEMEGVEVKEKDVCVKMMAAPINPSDINRIEGVYPVRPPLPAIGG YEGVGEVLSVGSAVKHLSPGDWVIPSPPSSGTWQTYIVKEESVWHKISKDSPIEYAATITVNPLTALRMLQDFVTLNSGDCIVQNGATSIVGQCIIQLAR HRGIHSINIIRDRVGSDEAKEMLKRLGADEVFTESQLEVKNIKGLLTNLPEPALGFNCVGGNSASLVLKFLRHGGTMVTYGGMSKKPITTSTSSFIFKDL SLRGFWLQKLMNSDKVNECRNSIDHLLCLAREGKLKYEMELVSFGDFHTALDKALGKLGSQPKQVLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45770			Polyketide synthase, enoylredu...		Potri.001G233300 [exp]	0	1
AT4G16360			5'-AMP-activated protein kinas...		Potri.016G006400 [exp]	2.00	0.7684
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.011G001000 [exp]	2.23	0.7933	TOM1.1
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Potri.002G212400 [exp]	5.83	0.7766
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	6.70	0.7518
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.010G031900 [exp]	11.40	0.7650	ECR1.2
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	13.85	0.7727
AT2G30000			PHF5-like protein (.1)		Potri.001G277700 [exp]	14.96	0.7617
AT4G32750			unknown protein		Potri.006G241200 [exp]	17.74	0.7418
AT3G44160			Outer membrane OMP85 family pr...		Potri.009G017100 [exp]	17.86	0.7502
AT4G28830			S-adenosyl-L-methionine-depend...		Potri.018G083800 [exp]	22.22	0.7467

Compare expression of checked genes

Potri.001G233300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.