Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07670 1800 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 1795 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 1372 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G10130 822 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT5G57110 344 / 1e-101 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT1G27770 335 / 1e-98 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT3G21180 335 / 4e-98 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT2G41560 334 / 4e-98 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G22910 330 / 6e-97 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G57330 326 / 2e-95 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025700 [exp] 1954 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 1361 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.014G014700 [exp] 795 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.002G117400 [exp] 790 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.008G159100 [exp] 361 / 4e-108 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G072900 [exp] 361 / 1e-107 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.013G040201 [exp] 350 / 5e-104 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 349 / 1e-103 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G215600 [exp] 347 / 1e-102 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042843 [exp] 1837 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 1835 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 1570 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 839 / 0 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10007734 [exp] 808 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018668 [exp] 739 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10001638 [exp] 347 / 2e-102 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 344 / 2e-101 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10034840 [exp] 337 / 1e-98 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10016366 [exp] 328 / 6e-96 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G233400.5 pacid=42789446 polypeptide=Potri.001G233400.5.p locus=Potri.001G233400 ID=Potri.001G233400.5.v4.1 annot-version=v4.1 ATGGGTAAAGGAGGGGAAGATCATGGTAAAAAGGAAGAGAATGGTATCGAATCACGAAAAAAGGATGATGATACCTTCCCTGCTTGGGCTAAGGATGTCA AGGAATGTGAAGAGAAGTACGAAGTAAATCGTGAAGTTGGGTTGTCGGATGCGGATGTTGAGAAGAGGAGAAAGATCTATGGGTACAATGAATTGGAGAA ACATGAGGGTGTTTCGATTTTTAAACTGATATTGGATCAATTTAATGACACGTTAGTTAGAATTTTGCTAGCTGCCGCGGTTATATCTTTTGTATTGGCT TGGTATGATGGGGATGAAGGGGGGGAGATGGAGATAACTGCGTTCGTGGAGCCGTTGGTGATTTTCTTGATCTTGATTGTCAATGCGATTGTTGGGGTCT GGCAGGAAAGTAACGCGGAGAAAGCATTGGAGGCTTTGAAGGAAATCCAATCAGAGCATGCCACTGTTATAAGAGATGCAAAGAAGTTCTCCAGCTTGCC TGCGAAGGAACTTGTCCCGGGGGATATTGTGGAGCTGAGAGTGGGTGATAAGGTGCCTGCAGATATGCGGGTTTTGCATTTGATTAGCTCCACACTTAGG GTTGAGCAAGGGTCGTTGACAGGAGAGAGTGAGGCGGTGAGCAAGACTGTTAAGCCTGTTGCAGAAAATACTGATATTCAAGGGAAAAAATGTATGGTTT TTGCAGGGACAACAGTAGTGAATGGGAACTGTATGTGCTTAGTTATGGCGACCGGAATGAATACTGAGATCGGGAAGGTGCATTCCCAGATTCATGAAGC CGCACAGAATGAGGAAGATACCCCATTGAAGAAAAAATTAAATGAGTTTGGAGAAGTTCTAACAGTTTTAATTGGAATTGTTTGTGCCGTAGTTTGGCTT ATTAATGTGAAGTACTTCCTCACTTGGGAATATGTTGATGGTTGGCCAAAGAATTTTAAATTCTCATTTGAGAAGTGCACGTACTACTTTGAGATTGCTG TCGCACTGGCAGTGGCTGCTATACCAGAAGGGTTGCCAGCAGTCATCACTACATGTTTGGCACTTGGAACTCGAAAGATGGCTCAAAAGAATGCACTTGT TAGAAAACTGCCTAGTGTTGAGACTCTTGGTTGCACAACTGTCATTTGTTCTGATAAAACTGGTACTCTAACTACTAATCAGATGGCCGTATCAAAGCTT GTGGCTATGGGTTCTAGGGTTGGCACTCTGAGAGCCTTCAACGTGGAAGGGACTACCTATAGCCCTTTTGATGGAAAAATAGAAGATTGGCCTGTGGGTC GAATGGATTCTAACCTTCAAATGATTGCTAAGATTGCTGCTGTTTGCAATGATGCTGACGTGGAGCAATCTGGGAATCATTATGTTGCTGGTGGAATGCC CACGGAGGCTGCCTTAAAGGTTATGGTTGAAAAAATGGGATTTCCTGAAGGGCGTCACAATGAATCATCTTTAGGTTGTGGGGATGTTCTAGCTTGCTGC CAACTTTGGAATAAAATGGAGCAGCGGATTGCAACTCTTGAGTTTGACCGTGATAGAAAATCCATGGGGGTTATTGTGAATTCCATCTCCCACAAAAAAT CATTGCTAGTGAAGGGTGCAGTAGAGAACTTATTGGATAGAAGCACATCTATTCAGTTGCTTGACGGCTCTGTTGTAGCGTTGGATCAGTATTCCAAGGA TCTTATCTTACAAAGCCTTCATGAAATGTCAACAAGTGCATTACGTTGTCTAGGTTTTGCATACAAAGAGGACCTTTCAGAGTTTGAAACATATAATGGT GATGAAGACCACCCAGCTCATCAGCTCTTACTTGAGCCGCGTAATTATTCTTCAATTGAGAGCAATCTCACTTTTGTTGGTTTAGCTGGGCTTAGGGATC CTCCTCGGAAAGAAGTTCGTCAAGCCATTGAGGACTGCAGAGCAGCTGGAATCCGTGTCATGGTCATTACAGGAGACAACAAGCATACAGCAGAAGCCAT TTGTCGTGAAATAGGTGTTTTTGGACCTTATGACGATATCAGTTCTCAAAGCTTGACTGGCAAAGAGTTTATGGACCATCGTGATAAAAAAACTCATTTA AGACATAGTGGAGGGTTGTTGATCTCCAGGGCTGAACCAAGGCATAAGCAAGAAATAGTAAGGTTGCTTAAAGAGGATGGTGAAGTTGTTGCTATGACTG GAGATGGAGTAAATGATGCACCTGCCTTAAAGTTGGCTGATATTGGCATAGCAATGGGTATTGCTGGGACAGAGGTTGCCAAGGAAGCCTCTGACATGGT GTTAGCAGATGATAATTTTAGCACTATTGTTGCTGCTGTCGGCGAAGGCAGGTCCATTTACAACAACATGAAGGCTTTTATCAGGTACATGATCTCCTCA AATATTGGTGAGGTTGCCTCTATATTTTTGACCGCTGCTTTGGGTATTCCGGAAGGAATGATCCCCGTTCAGCTTCTCTGGGTTAATTTGGTCACTGATG GGCCTCCGGCAACAGCGTTAGGGTTCAATCCCCCAGACGGAGATGTAATGAAAAAGCCTCCTAGAAGGAGCGATGACTCCTTAATTAATACCTGGATCTT ATTCCGTTACCTGGTGATTGGACTCTATGTTGGGATTGCAACAGTTGGTGTATTTATCATATGGTACACACATCACACATTCATGGGTATTGACCTTAGT GGAGATGGCCATAGTCTTGTCACTTACTCTCAGCTCGCAAACTGGGGCCAGTGTGGATCTTGGAAGGATTTTTCCGTGTCACCATTCACAGCTGGGTCGC AAGTGTTCAGCTTCGATGCAAATCCATGTGAATACTTCCGATCTGGAAAAATCAAGGCATCAACTCTCTCGCTTTCCGTATTGGTTGCCATTGAGATGTT CAATTCCCTCAACGCCCTCTCTGAGGACTGCAGCCTCTTGAGAATGCCCCCATGGGTCAATCCATGGCTCCTTTTAGCCATGTCTATTTCATTCGGCTTG CACGCTCTGATCCTTTACGTACCTTTCCTAGCTCAAGTATTTGGGATTGTTCCGCTCAGCTTTAACGAATGGCTTTTGGTACTGGCTGTGGCTTTCCCGG TCATTCTAATCGACGAGGTTCTCAAGTTTGTTGGGAGATGTACAAGAGGGTTGCGACAGTCTAATTCAACCAGACATTCAAAGCACAAGGCAGAGTAA
AA sequence Show only first row Show all	>Potri.001G233400.5 pacid=42789446 polypeptide=Potri.001G233400.5.p locus=Potri.001G233400 ID=Potri.001G233400.5.v4.1 annot-version=v4.1 MGKGGEDHGKKEENGIESRKKDDDTFPAWAKDVKECEEKYEVNREVGLSDADVEKRRKIYGYNELEKHEGVSIFKLILDQFNDTLVRILLAAAVISFVLA WYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATVIRDAKKFSSLPAKELVPGDIVELRVGDKVPADMRVLHLISSTLR VEQGSLTGESEAVSKTVKPVAENTDIQGKKCMVFAGTTVVNGNCMCLVMATGMNTEIGKVHSQIHEAAQNEEDTPLKKKLNEFGEVLTVLIGIVCAVVWL INVKYFLTWEYVDGWPKNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKL VAMGSRVGTLRAFNVEGTTYSPFDGKIEDWPVGRMDSNLQMIAKIAAVCNDADVEQSGNHYVAGGMPTEAALKVMVEKMGFPEGRHNESSLGCGDVLACC QLWNKMEQRIATLEFDRDRKSMGVIVNSISHKKSLLVKGAVENLLDRSTSIQLLDGSVVALDQYSKDLILQSLHEMSTSALRCLGFAYKEDLSEFETYNG DEDHPAHQLLLEPRNYSSIESNLTFVGLAGLRDPPRKEVRQAIEDCRAAGIRVMVITGDNKHTAEAICREIGVFGPYDDISSQSLTGKEFMDHRDKKTHL RHSGGLLISRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISS NIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDGDVMKKPPRRSDDSLINTWILFRYLVIGLYVGIATVGVFIIWYTHHTFMGIDLS GDGHSLVTYSQLANWGQCGSWKDFSVSPFTAGSQVFSFDANPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDCSLLRMPPWVNPWLLLAMSISFGL HALILYVPFLAQVFGIVPLSFNEWLLVLAVAFPVILIDEVLKFVGRCTRGLRQSNSTRHSKHKAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.001G233400 [exp]	0	1
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	3.31	0.8036
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030626 [exp]	17.94	0.7734
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	25.37	0.7597
AT5G47100		ATCBL9, CBL9	calcineurin B-like protein 9 (...		Potri.001G150200 [exp]	26.68	0.7541	CBL1.4
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	28.54	0.7567
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	34.20	0.7502
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	45.59	0.7542
					Potri.016G089400 [exp]	49.63	0.7303
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.006G208251 [exp]	63.27	0.7211
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	65.26	0.7419

Compare expression of checked genes

Potri.001G233400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.