Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 1554 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 1337 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 836 / 0 ATP binding microtubule motor family protein (.1) AT2G36200 783 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 250 / 3e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 246 / 2e-67 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 241 / 6e-67 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12020 238 / 3e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22610 239 / 6e-65 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G44050 233 / 1e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026000 [exp] 1862 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 1112 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 883 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.006G210700 [exp] 807 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 801 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 256 / 3e-70 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 246 / 9e-67 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 244 / 1e-66 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 236 / 7e-64 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018120 [exp] 1590 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 1559 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 979 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 944 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 885 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 874 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10021340 [exp] 815 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 792 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 731 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000392 [exp] 244 / 5e-66 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.001G233700.5 pacid=42793009 polypeptide=Potri.001G233700.5.p locus=Potri.001G233700 ID=Potri.001G233700.5.v4.1 annot-version=v4.1 ATGGATTCTTCATCACAGCAGAGAAGAGGAGGGGGTATAGTTTCGCAGTCGCCATCACCATCGCCATCGCAAACTCCGCGGTCGACTGATAAGGCAGCAA GAGATCTGCGATCTGGGGATTCCCATTCCAACTCCAGCACTAAACAGGATAAAGAAAAGGGTGTCAATGTGCAGGTCATAGTGCGTTGCAGGCCACTGAG TGAGGATGAGCTGAGGGTTCACACACCGGTGGTGATTTCTTGTAATGAGGGTAGAAGGGAAGTGTCAGCGGTTCAGAATATTGCTAACAAGCAGATTGAT AGAAACTTTCTATTTGACAAGGTTTTTGGCCCAGCATCCAAACAAAAGGAGTTGTATGATTCGGCAGTGTCTCCAATTGTGTATGAAGTTCTCGAAGGTT ATAACTGCACCATCTTTGCATATGGTCAAACAGGAACAGGGAAGACATACACAATGGAAGGAGGAGCAAGAAAAAAGAATGGAGAATTTCCAAGTGATGC CGGTGTTATACCAAGAGCAGTCAAACAGATTTTTGAAATATTAGAAGCTCAAAATGCAGAGTATAACATGAAAGTGACCTTCTTAGAGTTGTACAATGAG GAAATATCAGATCTTTTGGCCCAAGAAGAAACTTCAAAACTTATAGATGACAAATCTAAGAAACCCATAGCTCTAATGGAAGATGGAAAAGGGGGTGTTT TTGTGAGAGGCTTGGAAGAAGAGATAGTATGTACTGCTAATGAAATTTACAAAATCTTGGATAAGGGTTCTGCTAAAAGGCGCACAGCTGAGACTCTTCT TAACAAGCAAAGTAGTCGCTCTCACTCAATATTTTCCATCACCATTCACATTAAAGAATGTACTCCCGAGGGGGAAGAGATGATCAAATGTGGAAAGCTG AATCTTGTTGATCTTGCTGGTTCTGAGAATATTTCTCGTTCTGGTGCTCGAGAGGGGAGAGCAAGGGAAGCAGGGGAGATCAATAAAAGTTTGCTCACAC TTGGTCGTGTGATCAATGCTCTTGTTGAGCATTCTGGTCATGTTCCATATAGGGATAGCAAGCTAACCAGGCTATTGAGGGATTCACTGGGTGGGAAAAC AAAGACATGCATAATTGCCACGATATCACCCTCTATTCATAGTCTGGAAGAAACACTCAGCACTCTTGATTATGCACACCGTGCCAAAAATATAAAGAAC AAACCAGAGATAAATCAAAAGATGATGAAATCTGCAATGATCAAGGATCTGTATTCTGAAATTGACCGACTGAAGCAAGAGGTATATGCTGCAAGAGAGA AAAACGGAATCTATATACCGCGAGATCGTTATCTCCAAGATGAGGCTGAAAAGAAGGCAATGGCTGAAAAAATAGAACGCATGGAACTTGTATCGGAATC CAAGGACAAACAATTTTTGGAGATCCAGGAACTCTACAATTCACAGCTACATTTGACAGCAGATTTAAGCGAGAAACTCGATAAAACTGAGAAAAAGCTC GAGGAAACTGAAAATTCATTAGTGGATCTTGAAGAAAAACACAGACAAGCAAATGTAACTATAAAGGAGAAGGAATTTTTTATATCTAATCTCCTTAAAT CTGAGAAAGGACTAGTTGAGCGTGCATTTGAGCTTCGATCAGAGCTAGAAAATGCTGCATCAGACGTGTCCAGTTTATTTACCAAAATTGAGCGGAAGGA TAAAATTGAAGACGGGAACAGAGTACTTATACAGAAATTCCAGTCCCAGTTGACCCAACAACTTGAGATCTTACACAAGACTGTGGCAGCCTCAATGACT CAACAAGAGCAGCAGCTGAAAGACATGGAGGAAGATATGCAGTCCTTTGTATCAACAAAAGCCGAGGCTACTGAAGAACTTCGAGGAAGGGTTGGAAAGC TGAAAACCATGTATGGATCTGGTATTAAAGCATTGGATGATATGGCCAAGGAGCTCGAGGAAAATTCTCGTTCTACTTTTGGTAGTCTGAATTCTGAAGT TTCCAAGCATTCGCATGCTGTTGAGGGTTTCTTCCAAAGAATTGCTTCAGAAGCTGATGCATTATTCAATGATCTTCAAAGCAATCTTCAGATGCAGCAG GAAAAGCTAAGTGCATTTGCGCAACAGCAGCATAAGGCACATGCGAGAGCAGTAGAAACTGCACAATCAGTTTCGAAAATCGTAGTTAAATTCTTCAAGA CTCTAGACGTGCATGCTTCCAACCTGACCCAAATTGTGGAAGAAGCACAAATAATTAATGATCACAAATTGTCTGAACTGGAAAAGAAGTTTCAGGAGTG TGCTGCGAATGAAGAAAGACAATTGGTGGAGAAAGTGGCAGAGCTGCTTGCAAGTTCAAATGTGAGGAAGAAAAAACTGGTGCAAATGGCGGTGCATGAA CTCCGGGAAAGTGCAAACAGCAGAACCAACAAACTGCAGCAAGAAATGTCAACCATGCAGGATTCCACCTCTTCTATCAAAGTTGAATGGTCAGTCCACA TGGAAAAAACAGAATCCAACCATTTTGAGGACACATCTGCAGTGGAAAGTGGAAGGAAAGCCCTGGAAGAGGTTCTTCATAACTGTATAAATAAGACAAA AATGGGCGCACAACAGTGGAGGAATGCTCAAGAATCCTTGCTCAGCCTAGAAAAAAGCAATGTTCATTCTGTGGATTCCATTGTTAGTGGAGGAACCGAA GCGAACCAAATCCTTTGTAGACAGTTTTCTTCTGCTGTATCTGCTGCTGTTGAAGATGTTGACATTGGGAACAATGATCTCCTCTCATCCATTGAACATT CATTACATCTTGACCGTGATGCTTGTGGAAATCTCAATTCCATGATTTTTCCTTGCTGTGGAGATCTGAGGGAACTGAAGGGCAGTCACTACCACAAGAT TGTTGAAATTACAGAGAATGCTGGGAAATGTCTTCTGGATGAATATGCGGTGGACGAGCCATCTTGTTCGACACCAAGAAAGAGGCCATACAATCTGCCA ACCTTTGCATCAATTGAAGAACTTAGAACTCCTGCTTTTGAAGAATTGTTGAAGTCATTCTGGGATTCGAAGTCCTCAAAACAAGTAAATGGAGACATCA AACATATTGTGGCAGCATATGACGCTGCCCAATCCTTGAAAGACTCCAGAGTTCCTCTCACCGCTATTAACTAA
AA sequence Show only first row Show all	>Potri.001G233700.5 pacid=42793009 polypeptide=Potri.001G233700.5.p locus=Potri.001G233700 ID=Potri.001G233700.5.v4.1 annot-version=v4.1 MDSSSQQRRGGGIVSQSPSPSPSQTPRSTDKAARDLRSGDSHSNSSTKQDKEKGVNVQVIVRCRPLSEDELRVHTPVVISCNEGRREVSAVQNIANKQID RNFLFDKVFGPASKQKELYDSAVSPIVYEVLEGYNCTIFAYGQTGTGKTYTMEGGARKKNGEFPSDAGVIPRAVKQIFEILEAQNAEYNMKVTFLELYNE EISDLLAQEETSKLIDDKSKKPIALMEDGKGGVFVRGLEEEIVCTANEIYKILDKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKL NLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATISPSIHSLEETLSTLDYAHRAKNIKN KPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQDEAEKKAMAEKIERMELVSESKDKQFLEIQELYNSQLHLTADLSEKLDKTEKKL EETENSLVDLEEKHRQANVTIKEKEFFISNLLKSEKGLVERAFELRSELENAASDVSSLFTKIERKDKIEDGNRVLIQKFQSQLTQQLEILHKTVAASMT QQEQQLKDMEEDMQSFVSTKAEATEELRGRVGKLKTMYGSGIKALDDMAKELEENSRSTFGSLNSEVSKHSHAVEGFFQRIASEADALFNDLQSNLQMQQ EKLSAFAQQQHKAHARAVETAQSVSKIVVKFFKTLDVHASNLTQIVEEAQIINDHKLSELEKKFQECAANEERQLVEKVAELLASSNVRKKKLVQMAVHE LRESANSRTNKLQQEMSTMQDSTSSIKVEWSVHMEKTESNHFEDTSAVESGRKALEEVLHNCINKTKMGAQQWRNAQESLLSLEKSNVHSVDSIVSGGTE ANQILCRQFSSAVSAAVEDVDIGNNDLLSSIEHSLHLDRDACGNLNSMIFPCCGDLRELKGSHYHKIVEITENAGKCLLDEYAVDEPSCSTPRKRPYNLP TFASIEELRTPAFEELLKSFWDSKSSKQVNGDIKHIVAAYDAAQSLKDSRVPLTAIN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	3.00	0.9292
AT2G27900			unknown protein		Potri.001G212600 [exp]	4.24	0.9278
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	6.00	0.9151	ALPHA.13
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	6.63	0.9278
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	8.12	0.9133
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	8.71	0.9066
AT5G26850			Uncharacterized protein (.1.2....		Potri.013G008500 [exp]	8.94	0.9078
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	10.09	0.9013
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	12.64	0.9016	CAS.3
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	13.41	0.9003	Pt-SPIKE1.3

Compare expression of checked genes

Potri.001G233700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.