Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45830 1076 / 0 unknown protein AT1G02290 122 / 7e-29 unknown protein AT5G13950 70 / 9e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026100 [exp] 2175 / 0 AT3G45830 1059 / 0.0 unknown protein Potri.002G184000 [exp] 151 / 1e-37 AT1G02290 231 / 2e-69 unknown protein Potri.014G109600 [exp] 145 / 9e-36 AT1G02290 229 / 3e-68 unknown protein Potri.014G144100 [exp] 67 / 8e-11 AT5G13950 406 / 4e-127 unknown protein Potri.002G237800 [exp] 66 / 2e-10 AT5G13950 556 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036145 [exp] 1238 / 0 AT3G45830 1034 / 0.0 unknown protein Lus10018121 [exp] 960 / 0 AT3G45830 803 / 0.0 unknown protein Lus10028606 [exp] 145 / 3e-36 AT1G02290 206 / 7e-61 unknown protein Lus10018907 [exp] 142 / 4e-35 AT1G02290 210 / 3e-62 unknown protein Lus10031980 [exp] 57 / 9e-08 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 51 / 6e-06 AT5G13950 292 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G233800.8 pacid=42792956 polypeptide=Potri.001G233800.8.p locus=Potri.001G233800 ID=Potri.001G233800.8.v4.1 annot-version=v4.1 ATGGCGATTGAGAAGAACAATTTTAAGGTATCTAATAGGTTTGACGCGGAGCTTTCTCCCAATAGTAGGGATACTAGCATGTCCAGCGACGAGGATGAGG ATGACCTGCTTCATCACCAGCGGATTAAGTCTGATGATGACGAGGAGGAGGTTGAGGATGCTGTTGATGTAGGTGTTGAAGAGGATGATGATGATGAATT CGACGATGCTGATTCGGGGGCGGGATCTGATGATTTTGACTTGTTAGAATTAGGGGAAACCGGGGCGGAGTTTTGCCAATTTGGGAATTTAACCTGCAGT GTTCCTTTTGAATTGTATGACCTTCCTGGCTTGGAGGATATTTTGTCTGTTGATGTGTGGAATGATGTTTTGACTGAAGATGATAAATTTAGCCTTACTA AGTATTTACCTGATGTGGATCAGGACACCTTTATGCGAACCCTTAAAGAGCTTCTCGAGGGTGGGAATTTCCATTTTGGTAGTCCCCTCAACAAGTTGTT TCAGATGCTTAAGGGAGGGTTGTGTGAGCCAAGGGTTGCCCTTTATAGGGATGGTTTGAATTCCTTTCAGCAACGGCAGCATTACCATATTTTGAGGAAG CATCAGAACAGTATGGTTAGTCATTTGTGCCAGATAAGAGATGCTTGGCTTGATTGTAAAGGGTATAGCATCGATGAGAAACTTAGGGTTTGGAATATTA TGAAGAGTCATAAGAGTTTGATGTATGAGAATGTGGAGGGAGAATTGGAGAGTGGCTCATCGGATAAAGGAGAATCAGGTGATGGGTTTTGGGGAAAAAG GGTTAAAGATAAGAAGAGTGCATCCAAATTTGATCGTAATTCAGCATACCAGGTTGGTTCTAATTTGGAATTTTCTTCACCAGTCAGTTTGGAAGTGGTA AAGTATGGAAAGCAAAATCCCAAGAGTATACTTAAGTCGGCCGGGTCAAAAGATCTTTCAACTAGAGATGTGCTGGGTCGAATTCCTTCTGATCATCATG GTTTGGGGATGACTTCAAGGCCACGTCGATCAGCCTTGATGGTTTCTCGGCAGAATAAGCTAGCTGGGTATGACTCAGGAGATGCACTCAGGCTAAGGGA TCAAACGAGAACTGATAATGATGATGCTGAATATGCAATGTATGGAATGGGTGTCCAAAGAGATCGAAATATGACACGTGGTGGTGATATGGTGAAATCC AGGGTTCCAAAAGTGGGAAAGAAGCATGAGTTCTTGAGAAGTGATGGATTAGCTGCTGACAGTTTCATGGATTTGCCTTTCTCTTCAAACAATGAATTAC TTGCCTATGGTAGGAACAAGAATGCAAATCAGCTGTCAGAAGCTAAAGTGTTCGCGTCAAATCGTAGCAATACTCGGACCAAGTCTGAATCTTCCAAAAA GACCAAGTATGCTGAAAATTTTTCGCAATTCACAGTTCCTGATCAGATGAAGTATTTGAAAGGCCGGACTCTGCAGCTACCCCGTAAAGGTAATCGAGTT GAATTGTCAGATCATGCCGAACCAGTTTGGCATAGCAAGAACCAAGGAGAAGTTTTCTCTATGGATTCTACATTTAAAATTAATGACTGGAATATGAGAG GCAAGAAATGGAGGACAGAGAGAGAGTCTCCGGATCTTAATTTTAGAGCTTATAGAGCATCCTCGCCCCAGGTGAATGATAGAATGGTGCTGTCTGAGGT GAAAGCAAAATCATCACGGGAGAAGATCAGAGGGAATGTTATACAGAATGGAGGACCAGATAAGGGAGCATTGAAAGGTAACAGAATTTATGTAAAAGGT GAAGAAACAGAAACGGACTCTTCTGAACAATTTGAGGAGGAGGAGCAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGATAGCAATCCTTTGATGA GAAGCAAGTCAGCTTACCCCATTGGTATCTCAGAAGGTTATCGATCATCCTTTTTGAAGTCTCGCTTAGATGCTAAAAAGGCCTCATCTATTAAGAAAGA TACGCTGGAGAATGAACTAGCTTTCGACGGTGTCACTCAGTTCTCCAAAAAGGTGGGTGGCTTTACCGAGTCTGGACAAATGCCTGGATACTCATCAAAA GCTAAACAGAAGGGTAAGATGCAAGAGACGCGTAGCTCTAGTGCTAGAGTTTTGGAAGACAGCTCTCCCATTGGCTTGGCTAAACTAAAAGATGATAATG ACAGAAACCGGGTACACAGATTTGGCAAGATTGGTCAATTGCGTGTGGAATCTGGTGAAAGGTCACGCAGGACCTCGTCAAAAGCCCACCCTTCTGACAG AAAGCATAAAGGTGAAGTTAGCCATGAATTTATTGTTGATGACGAGGATGAGTTACTTGAAACACAGTTAACGTCAGATGAAAATGCACTGGGTAGATTC CGGAAGAAAGGACAGAGCATGGAAACATATGTTCATGGTCAAAGTGACCGATCTGAGGCTTCGTTGCTAGCGTGCAACTCGGTGACGAAGAAACGGAAAG CAAAGTACAAAGTGATGGACATGGCTGGAAGAGATGAAGATAGTAATAGGCAGTCTAGTAGTGCTCAGCAGCAAATTGATGACTCCATTTCATTGAAGAA AAAAGGGAAAAGGAAATTGGAGGCTGACGATGTTACTCCAGACAGGGAAACTCCTGAGGCACACATTCCAAAAACAGGAGTGGTGGATGTGGAGCTGGAA GCCAAACCTCAGAAAAAACCGTATATTCCGATTACACCAACAGTTCATTCTGGCTTCTCCTTTTCCATTATACATCTCCTCTCAGCAGTTCGTGTGGCAA TGATCACTCCTCTTTCAGAAGATTCCTTAGAGGTTGGCAAGGCTACAGCAGAGCTGAACAGAGCGCAAGAAGGTGACACCAATGGGGTTCTTTCTAATGA GAATGTAGATGTTAATAAATCACACCCTGCTGTGCAAGTGAAAATGCCCTCTCTTACTGTACAGGAGATTGTTAACCGTGTGAGATCAAACCCTATGGAT CCATGTATACTCGAGACACAGGAGCCACTCCAGGATTTGGTCAGAGGAGTTCTTAAGATATTTTCATCGAAAACAGCACCTTTAGGAATAAAGGGTTGGA AAGCACTTGTTTTTTATGACAAATCTACAAAAAGTTGGTCCTGGATTGGCCCAATTTCTCATGCTTTGACTGATGAGGACACTATCGTTGAAGTGACATC TCCTGAATATTGGGGCCTTCCTCACAAAAGTTGTGTCAAGTTGGTCGACTCATTTGCTAATTGGCTGAAAAGCGGGCAAGAGACTCTTCAACAAATTGGT AGTCTTCCCGCACCGCCTGTGTCATTGATGCAATGTAACCTGGATGAGAAAGAAAGGTTCAGGGACTTGAGAGCTCAGAAAAGTCTCAACACTATTAGCC CGAGTTCTGAAGAAGTTAGAGCTTATTTTCGCAGGGAAGAAGTGCTGAGGTATTCAATTCCTGACAGGGCCTTCTCATACACGGCTGCTGATGGTAAAAA ATCTATTGTTGCTCCCTTGAGGAGGTGTGGTGGTAAGCCAACTTCAAAAGCTCGAGACCATTTCATGCTGAAGCGTGATCGACCACCTCATGTTACAATT CTTTGCCTTGTGAGAGATGCAGCTGCTAGATTGCCAGGTAGTATTGGCACTAGAGCAGATGTTTGTACTTTGATACGGGACTCTCAATATATTGTTGAAG ACGTGTCTGATGCCCAAGTGAATCAAGTTGTCAGTGGAGCCTTGGATCGTTTGCATTATGAGCGCGATCCTTGTGTGCAATTTGATGGAGAAAGGAAATT GTGGGTTTACTTGCACAGAGATCGAGAAGAAGAAGATTTTGAAGATGATGGAACTTCATCTACTAAGAAATGGAAAAGACAGAAAAAAGATCCTGCTGAT CAATCTGATCAAGGAACAGTTACTGTTGCTTTTCATGGGACAGGGGATCAATCCGGATTTGATTTGGGCTCTGACCTGAATGCTGAGCCACTAGCCGCTG ATGATGATAAAAGAACAGATCTTGTATGTAGTGATGTGAGGCATAACGCAGAGGATAATATTGATACCTCTCATGGGCCCAAGCAAGGCAGCACATATGA CGGTGATGCAATGGTTTGGGATGCCCTTAGCTTAAATCCTTTGCAAGAGAACAAAGTGATATGTCAAGAAAATTCCACAAATGAAGATTTTGATGATGAA ACATTTGAGAGAGAAAGGCCGGCTGGACTTTTAAGTACAAGCTTATTATGA
AA sequence Show only first row Show all	>Potri.001G233800.8 pacid=42792956 polypeptide=Potri.001G233800.8.p locus=Potri.001G233800 ID=Potri.001G233800.8.v4.1 annot-version=v4.1 MAIEKNNFKVSNRFDAELSPNSRDTSMSSDEDEDDLLHHQRIKSDDDEEEVEDAVDVGVEEDDDDEFDDADSGAGSDDFDLLELGETGAEFCQFGNLTCS VPFELYDLPGLEDILSVDVWNDVLTEDDKFSLTKYLPDVDQDTFMRTLKELLEGGNFHFGSPLNKLFQMLKGGLCEPRVALYRDGLNSFQQRQHYHILRK HQNSMVSHLCQIRDAWLDCKGYSIDEKLRVWNIMKSHKSLMYENVEGELESGSSDKGESGDGFWGKRVKDKKSASKFDRNSAYQVGSNLEFSSPVSLEVV KYGKQNPKSILKSAGSKDLSTRDVLGRIPSDHHGLGMTSRPRRSALMVSRQNKLAGYDSGDALRLRDQTRTDNDDAEYAMYGMGVQRDRNMTRGGDMVKS RVPKVGKKHEFLRSDGLAADSFMDLPFSSNNELLAYGRNKNANQLSEAKVFASNRSNTRTKSESSKKTKYAENFSQFTVPDQMKYLKGRTLQLPRKGNRV ELSDHAEPVWHSKNQGEVFSMDSTFKINDWNMRGKKWRTERESPDLNFRAYRASSPQVNDRMVLSEVKAKSSREKIRGNVIQNGGPDKGALKGNRIYVKG EETETDSSEQFEEEEQEDEEEEEEEEEDSNPLMRSKSAYPIGISEGYRSSFLKSRLDAKKASSIKKDTLENELAFDGVTQFSKKVGGFTESGQMPGYSSK AKQKGKMQETRSSSARVLEDSSPIGLAKLKDDNDRNRVHRFGKIGQLRVESGERSRRTSSKAHPSDRKHKGEVSHEFIVDDEDELLETQLTSDENALGRF RKKGQSMETYVHGQSDRSEASLLACNSVTKKRKAKYKVMDMAGRDEDSNRQSSSAQQQIDDSISLKKKGKRKLEADDVTPDRETPEAHIPKTGVVDVELE AKPQKKPYIPITPTVHSGFSFSIIHLLSAVRVAMITPLSEDSLEVGKATAELNRAQEGDTNGVLSNENVDVNKSHPAVQVKMPSLTVQEIVNRVRSNPMD PCILETQEPLQDLVRGVLKIFSSKTAPLGIKGWKALVFYDKSTKSWSWIGPISHALTDEDTIVEVTSPEYWGLPHKSCVKLVDSFANWLKSGQETLQQIG SLPAPPVSLMQCNLDEKERFRDLRAQKSLNTISPSSEEVRAYFRREEVLRYSIPDRAFSYTAADGKKSIVAPLRRCGGKPTSKARDHFMLKRDRPPHVTI LCLVRDAAARLPGSIGTRADVCTLIRDSQYIVEDVSDAQVNQVVSGALDRLHYERDPCVQFDGERKLWVYLHRDREEEDFEDDGTSSTKKWKRQKKDPAD QSDQGTVTVAFHGTGDQSGFDLGSDLNAEPLAADDDKRTDLVCSDVRHNAEDNIDTSHGPKQGSTYDGDAMVWDALSLNPLQENKVICQENSTNEDFDDE TFERERPAGLLSTSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45830			unknown protein		Potri.001G233800 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	2.44	0.8994
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	2.64	0.9232
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	3.00	0.9173
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	3.46	0.9189
AT3G45830			unknown protein		Potri.009G026100 [exp]	5.29	0.9101
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	5.91	0.9001
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	6.24	0.8889
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	8.36	0.8934
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	9.79	0.8907
AT3G17740			unknown protein		Potri.015G033300 [exp]	10.39	0.8936

Compare expression of checked genes

Potri.001G233800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.