Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60050 532 / 0 BTB/POZ domain-containing protein (.1) AT1G63850 348 / 2e-114 BTB/POZ domain-containing protein (.1) AT3G50780 286 / 8e-91 unknown protein AT2G13690 195 / 8e-56 PRLI-interacting factor, putative (.1) AT3G05675 53 / 2e-07 BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100900 [exp] 357 / 4e-116 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 330 / 6e-106 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 314 / 3e-101 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 305 / 8e-98 AT3G50780 623 / 0.0 unknown protein Potri.005G058700 [exp] 224 / 2e-66 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 215 / 3e-63 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 62 / 4e-10 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G086100 [exp] 60 / 2e-09 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.006G202900 [exp] 53 / 3e-07 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023336 [exp] 555 / 0 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 543 / 0 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 348 / 2e-113 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 336 / 3e-108 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 304 / 8e-98 AT3G50780 602 / 0.0 unknown protein Lus10028772 [exp] 306 / 5e-97 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10016789 [exp] 236 / 2e-73 AT3G50780 408 / 1e-140 unknown protein Lus10020892 [exp] 184 / 1e-51 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10033484 [exp] 181 / 2e-50 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 74 / 1e-13 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G233900.1 pacid=42789641 polypeptide=Potri.001G233900.1.p locus=Potri.001G233900 ID=Potri.001G233900.1.v4.1 annot-version=v4.1 ATGGCTTCAGAAAGACAAGTTTCAAGAATGATAAAGCAAGGATTTTTATCCTCAGACCCAACTCTTTCTTTTAACTTGCCATCATCAACAACTCCACCTC AGATGAAGATGGTCTCAAATAATGGTAGGAGTAATAGGAGCCTTAACAATCTTTCTCCACCATATACTACTACTCCAGTATATCCAGATCACCAAAACCA AACTTTGTTCCAGATTATGTCAGAGGAACAGAACCACCAAAGTAAAATCTCAAAAATAATGAAAGAATTCGAGGACTTGAATTGCTATGGAAGGGGCGAT GTGAGGCTGACAGTAATTGGGAAAGATGGGCATACACGGATTTCAATGGATGTGCATAAAAGGGTTCTGTTGGAAAAGAGTGGCTTCTTTAGGGATACTT TGAGAGGGAGAGATCAAGGGGTTGTTATGCAATCTGTGGAGATCAGTGACTGTGATGATGTTGAGGTTTATTTGGAGACTTTAGTTTTGATGTATTCTCA TGATCTGAAGAGGAGATTGATGGATGAGGACGTCTCAAGGGTCTTGGCTTTCCTCAAGGTATCTGCAGATATCATGTTTGAAACAGGGATTGAGTCATGC TTGGAATGCTTGGAAGCTATTCCATGGTCTGAGGATGAAGAGGAAAAGGTTGTAACTCAACTCAGTCAACTTCAGCTCTGTGACTTGGCAGCTGAAGTTC TCCAGAGAGTGTCATCCGAACCATCTACATCTACTAGGGCTGATGACATCTTCTTGAGACTGTTGAGTGGTGTTATGCAGGCCAAAGACGACAAAGCCCG CCGAGAAATGAGAACTCTGATTTCTCGCTTTTTTAGAGAAAATTCATCTGATCACAGCAATAGGCTTGATGTTTCTAAAGATTCCCTTTATTCTCTCTGC CACAGATGTCTTAGCTCTCTTATTCTATGCTTATCTGAAGTTACTGGCATAGATGACTGCAGGGTTGATAGAGGGGTTTTAATGGCCCAAGTAGCTCAAG AAGCTGAGAATATGCGCTGGATTGTTGACATTCTAATTGATAGAAAAATTGGTGATGAATTTGTGAAATTATGGGCAGATCAGAAGGAGCTTGCACTTCT CCATTCTAGAATTCCAACCATGTACCGACATGAAATCAGCAAGATTACTGCACAACTATGCATTGCAATTGGGAGAGGACATATCTTGGTGCCAAAAGAT AGCAGGTTTTCTTTGCTGTCTACCTGGTTGGAAGCTCTTTATGAAGACTTTGCGTGGATGACAAGGTCTTCTAGATCTGTGGATAAGAAACTGGTGGAGG ATGGACTTAGCCAGACAATTCTTACCCTTCCATTGCTTCAACAACAGACTATTTTGCTTACTTGGTTTGACCGTTTTCTTAGTAAGGGGGATGACTGCCC CGATATCCAGAAAGCATTTGAGGTCTGGTGGAGAAGAGCTTTCATCAGACAATATGCGGCTGAACAGGATAGTTCCCACTTGCAAATAACTGTCTGTGAT CATCCAGACTGA
AA sequence Show only first row Show all	>Potri.001G233900.1 pacid=42789641 polypeptide=Potri.001G233900.1.p locus=Potri.001G233900 ID=Potri.001G233900.1.v4.1 annot-version=v4.1 MASERQVSRMIKQGFLSSDPTLSFNLPSSTTPPQMKMVSNNGRSNRSLNNLSPPYTTTPVYPDHQNQTLFQIMSEEQNHQSKISKIMKEFEDLNCYGRGD VRLTVIGKDGHTRISMDVHKRVLLEKSGFFRDTLRGRDQGVVMQSVEISDCDDVEVYLETLVLMYSHDLKRRLMDEDVSRVLAFLKVSADIMFETGIESC LECLEAIPWSEDEEEKVVTQLSQLQLCDLAAEVLQRVSSEPSTSTRADDIFLRLLSGVMQAKDDKARREMRTLISRFFRENSSDHSNRLDVSKDSLYSLC HRCLSSLILCLSEVTGIDDCRVDRGVLMAQVAQEAENMRWIVDILIDRKIGDEFVKLWADQKELALLHSRIPTMYRHEISKITAQLCIAIGRGHILVPKD SRFSLLSTWLEALYEDFAWMTRSSRSVDKKLVEDGLSQTILTLPLLQQQTILLTWFDRFLSKGDDCPDIQKAFEVWWRRAFIRQYAAEQDSSHLQITVCD HPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60050			BTB/POZ domain-containing prot...		Potri.001G233900 [exp]	0	1
AT2G01680			Ankyrin repeat family protein ...		Potri.010G106800 [exp]	2.00	0.7141
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.006G026200 [exp]	9.32	0.7020
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.018G149500 [exp]	14.96	0.6925
AT2G21120			Protein of unknown function (D...		Potri.019G001100 [exp]	24.81	0.6987
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	38.18	0.6907
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.001G189200 [exp]	47.69	0.6161
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G146700 [exp]	49.89	0.6180
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	66.24	0.6655
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.008G127400 [exp]	76.73	0.6272
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046200 [exp]	90.91	0.6531

Compare expression of checked genes

Potri.001G233900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.