Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60800 44 / 3e-06 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 42 / 1e-05 Leucine-rich repeat protein kinase family protein (.1) AT5G16000 39 / 0.0001 NIK1 NSP-interacting kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188800 [exp] 50 / 2e-08 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G043200 [exp] 50 / 2e-08 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.017G108000 [exp] 45 / 9e-07 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.011G068700 [exp] 41 / 2e-05 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 41 / 3e-05 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G134100 [exp] 40 / 5e-05 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.003G175700 [exp] 37 / 0.0007 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030898 [exp] 55 / 4e-10 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 55 / 5e-10 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10019145 [exp] 40 / 7e-05 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 40 / 7e-05 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G233950.1 pacid=42788878 polypeptide=Potri.001G233950.1.p locus=Potri.001G233950 ID=Potri.001G233950.1.v4.1 annot-version=v4.1 ATGTGCTTGGCCTACCATGAGAATTACTTTGACCATGAAAGTTGCTTTGACAAGGTTAATGCCATTTCAGATCCTCCTATACCAGCTGCAACTGGCAAGC TGGAGAAGCTTCAGACGGTAGATCACTCTAACCATACATTTTGTGGACAAGCACCCTCTCCTTTGGGGTATCTCAAGAGCCTGAATACCTATTCCAGTTT GCAGTCCTGGCAAATTCAGGTCGCTCTTGCTTTTAGTTGGCTTAGTCAAAATCTACTGGTTTATGAGAGAAAGTGA
AA sequence Show only first row Show all	>Potri.001G233950.1 pacid=42788878 polypeptide=Potri.001G233950.1.p locus=Potri.001G233950 ID=Potri.001G233950.1.v4.1 annot-version=v4.1 MCLAYHENYFDHESCFDKVNAISDPPIPAATGKLEKLQTVDHSNHTFCGQAPSPLGYLKSLNTYSSLQSWQIQVALAFSWLSQNLLVYERK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.001G233950 [exp]	0	1
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Potri.010G168700 [exp]	26.26	0.6062
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	34.35	0.5477
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Potri.009G055500 [exp]	52.96	0.4999
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.002G137900 [exp]	87.46	0.4519
AT4G34770			SAUR-like auxin-responsive pro...		Potri.009G127400 [exp]	141.24	0.4094
					Potri.001G121650 [exp]	147.20	0.4792
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	153.40	0.4551
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	171.79	0.4237
AT4G34040			RING/U-box superfamily protein...		Potri.005G139900 [exp]	206.43	0.4035

Compare expression of checked genes

Potri.001G233950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.