Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07870 589 / 0 Protein kinase superfamily protein (.1.2) AT2G28590 541 / 0 Protein kinase superfamily protein (.1) AT5G02800 501 / 5e-178 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 493 / 4e-173 Protein kinase superfamily protein (.1.2) AT5G13160 467 / 1e-163 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 430 / 3e-150 Protein kinase superfamily protein (.1) AT1G61860 414 / 1e-143 Protein kinase superfamily protein (.1) AT3G24790 410 / 1e-142 Protein kinase superfamily protein (.1) AT1G20650 410 / 4e-142 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G07070 408 / 5e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026500 [exp] 715 / 0 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 526 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 517 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 507 / 5e-180 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 495 / 1e-173 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 492 / 1e-172 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 484 / 2e-170 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 484 / 3e-170 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 449 / 2e-157 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041426 [exp] 499 / 3e-177 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 498 / 1e-176 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 495 / 1e-175 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 494 / 4e-175 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 494 / 2e-173 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 493 / 5e-173 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 486 / 5e-171 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 474 / 1e-167 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 472 / 2e-165 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 417 / 3e-144 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G234100.1 pacid=42790105 polypeptide=Potri.001G234100.1.p locus=Potri.001G234100 ID=Potri.001G234100.1.v4.1 annot-version=v4.1 ATGGGTTTTCTTTGCTTTTCCGGAAAATCGAGTAAGCGATCAGAGAACAGCAGCATCGATGAAAATAACAGTAACATTAAACGCAAAGATCAAACACAAC TAACTTCAGGGTCGATGAAAGTGAAGCCATATGTGAACGATTCAAGGGAAGAAGGGGCGTCCAAGGATGATCAACTGTCGTTGGATGTAAAGAGTTTAAA TTTGAAGGATGAGATTTCTAAGGATATAAGAAACAATGGAAATCCGGCTCAAACATTTACTTTTGAGGACCTCGTGGCCGCAACTGACAATTTTAGGTCT GATTGTTTTTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAAGGGTACCTGGAAAAAATCAACCAGGTTGTCGCTATCAAGCAACTTGATCAAAATGGAC TTCAAGGGATAAGGGAGTTTGTAGTTGAAGTGCTGACACTAAGTCTAGCAGACAATCCAAATCTTGTCAAGTTGATTGGATTTTGTGCTGAGGGAGATCA GAGGTTATTGGTTTATGAGTACATGCCATTAGGATCTCTGGAAAATCATTTGCATGATATTCCGCCCAATAGGCAACCGCTTGATTGGAATGCAAGAATG AAAATAGCTGCTGGTGCAGCAAAGGGTTTAGAGTATTTGCACAATGAAATGACACCCCCTGTTATATATCGTGATCTAAAAGGCTCCAATATTTTGCTTG GCGAGGGCTATCATCCTAAGCTATCTGATTTTGGGCTGGCAAAAGTGGGACCCAGCGGTGACCATACTCATGTTTCTACAAGGGTTATGGGCACATATGG GTACTGTGCACCGGATTATGCAATGACAGGTCAGCTGACGTTTAAATCAGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAA GCAATTGATCAAACAAAAGAACGCAATGAGCAAAATCTGGTCGCATGGGCGCGACCCATGTTCAAAGACCGGAGGAACTTCTCATGCATGGTTGACCCTT TCCTTCAAGGTCAATATCCAATAAAAGGATTATACCAAGCTCTTGCCATTGCTGCAATGTGTGTGCAGGAGCAGCCCAATATGCGCCCTGCTGTATCTGA TGTGGTTTTGGCTCTGAACTATCTAGCTTCACACAAATATGATCCCCGAATCCATCCTTTACAAGACCCTCGGAGGAGACCATCTCATCCCGGATTGGAT GAGGACAATGGTAGAACATAA
AA sequence Show only first row Show all	>Potri.001G234100.1 pacid=42790105 polypeptide=Potri.001G234100.1.p locus=Potri.001G234100 ID=Potri.001G234100.1.v4.1 annot-version=v4.1 MGFLCFSGKSSKRSENSSIDENNSNIKRKDQTQLTSGSMKVKPYVNDSREEGASKDDQLSLDVKSLNLKDEISKDIRNNGNPAQTFTFEDLVAATDNFRS DCFLGEGGFGKVYKGYLEKINQVVAIKQLDQNGLQGIREFVVEVLTLSLADNPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDIPPNRQPLDWNARM KIAAGAAKGLEYLHNEMTPPVIYRDLKGSNILLGEGYHPKLSDFGLAKVGPSGDHTHVSTRVMGTYGYCAPDYAMTGQLTFKSDVYSFGVVLLELITGRK AIDQTKERNEQNLVAWARPMFKDRRNFSCMVDPFLQGQYPIKGLYQALAIAAMCVQEQPNMRPAVSDVVLALNYLASHKYDPRIHPLQDPRRRPSHPGLD EDNGRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07870			Protein kinase superfamily pro...		Potri.001G234100 [exp]	0	1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.009G056400 [exp]	3.16	0.8352
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	7.87	0.8567
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G324800 [exp]	12.48	0.8197
AT4G32020			unknown protein		Potri.006G260000 [exp]	13.07	0.7833
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.005G219500 [exp]	17.14	0.7283	Pt-WRKY21.1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	17.32	0.8285
AT2G17705			unknown protein		Potri.005G107700 [exp]	18.65	0.8130
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	23.55	0.7882
AT3G12650			unknown protein		Potri.001G269000 [exp]	25.98	0.8132
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.008G009800 [exp]	28.35	0.7935	MKK4.2

Compare expression of checked genes

Potri.001G234100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.