Plant FIBer expression Database

Potri.001G234300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46220 978 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040874
[exp]
1040 / 0 AT3G46220 980 / 0.0 unknown protein
Lus10004920
[exp]
1025 / 0 AT3G46220 963 / 0.0 unknown protein
Lus10000152
[exp]
144 / 9e-40 AT3G46220 176 / 3e-52 unknown protein
Lus10000127
[exp]
99 / 6e-24 AT3G46220 126 / 1e-34 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09743 E3_UFM1_ligase E3 UFM1-protein ligase 1
Representative CDS sequence
>Potri.001G234300.6 pacid=42792241 polypeptide=Potri.001G234300.6.p locus=Potri.001G234300 ID=Potri.001G234300.6.v4.1 annot-version=v4.1
ATGGACGCAGAATTGTTAGAATTGGCGAGACAATTTGAGTCCGCGCAGCAAGCAAAATCGAGCATCCGATTATCTGAAAGAAACGTCGTCGAATTAGTCC
AAAAACTCCACGAGCTTCACATCATCGATTTCAACCTTCTCCACACTGTCTCCGGCAAAGAATACATCACTCCTGAGCAATTGAGGCATGAAATGGTGTT
GGAGATCAAGAAATTAGGGCGTGTTTCCTTGATAGATCTTGCGGATATTACTGGCGTTGATTTATATCACGTCGAGAACCAAGCTCAACGCGTCGTTTCG
GATGACCCGAGTGGGCTGATGTTGATTCAAGGAGAAATTATTTCGCAGTCTTATTGGGACAATGTTGCTGAAGAAATCAATGAGAGGCTTCAAGAATGCA
GTCAAATTTCTTTGGCGGAAATCGCAGCTAACTTGAATGTTGGCTCTGAACTTGTGGCTTCCATGTTGGAAGCTCGCCTCGGAACTCTGGTGAAAGGTAG
GCTTGAAGGTGGACAATTGTATACACCAGCTTATGTTACTCGTGTTAGCGCCATGGTTCGTGGTGCTGCGAGGGGTGTTACCGTTCCTACAAATTTGTCT
TTTTTGTGGGGAACCCTGCAGCAGTTGTTGCAAGCAATGGATGGAGCTGGTGGTGTGGCTACTGAAAGTTCATTTTTCCAATCCTTATTTAATGGGCTGG
CGAAGGAAGGGGAGATTCTTGGATCACTTCGAGCAGGAGTTCATTGGACACCAACTGTGTTTGCCACTGCTCAAAGGGAGTGTGTAGATTCTTTCTTTTC
TCAGAATTCTTTTATCAGCTATGATACTCTGCAAAACCTTGGAATTTCCCAGCCTGTTCAGTTCTTGCAGTCCAGATATGCTGAAGGTATACCTCTGGTA
ACTGCATTTGCTCATCCCTCCATGATTGAGATGTTGGATGCTGCTGTTGAGGATGCTATTGACCGTAGTAGCTGGATTGATTCTCTTTCTGTATTACCCA
CTTCTTTTGGATCCCAAGATGCTTCTAAGATTTTGTCGCATTGTAATTCTGTTCAGTCAGCACTCAAGGGTAATAAAGGAATGATCCTGGGGGATTCATA
TGTATTTAGCAATGGTTTTATCAAGGATGTTTATGGTCGGATGGAGAAAGAGCTGGAGGTCTTTAGGCTCTCAGGGTCCTCTGGTGTTATACTGAGTGAT
GACTTTCATTTGGTCATGGAAGCTAAAATTAGAACTGATTCTGGCCGGTCTGGTGAAGTAAATGAGAAAAAGAAGAAGAAGGGGAAATCATCTGGAGCAA
GAACTGAAATCCTTCTAGATGATGAGGAAATTATTCCTTTGAAATCTAAGAAAAACCAAAGGAAAGGCAAGGAGGCATCTTTGGTCCTGTCTGATACAAA
AAAGGGAGCTAAGAAAGATTTAGCTAGAACGCAAGAGGATGATCTTAACATTCCTTCTGATGATTGGATAATGCAAAAGATCCTGACTCTGGTTCCTGAT
TTTGAAGAGCAAGCTGATCTGGCAGGTTTGGAAGATCCACAGACAATTCTTGGACCTTTAGCTAACTATATGAGACCTATGTTAATTAGTTCCTTAAAGG
AGAAAAGAAAGACATTATTTTCAGAAAATGCTGGGAAAATGAAGCACCTGCTTGATAATTTACAAAAGAAGCTTGATGAGGCTTTCTTAAATATGCAACT
GTATGAAAAGGCACTAGATTTATTTGAGGATGACCAATCAACCTCTGCTGTCTTGCACAGGCATTTGTTAAGAACAATGGCTGCTTCTATTGGAGATATG
CTTTTTCATAACTTGGACATGCACAACAAATTGAAGAACGGAATTAATGTTGAAGAGTCTCCAAATTCAGAATCTATCACGCTTGGTTCTGCAGAAAGAA
CTGCTCTTGCAAAAAGCTTTCCAGGATCCCTTTCAAAAAAGGCTCTTGCAGTAGTTGAAGCTTTGGAAGGGAAGCGGGTGGAAGCTTTCATGACTTCACT
AAGAGAGGTGGCAGAGGAGAGTGGGTTGCTCTTGAAAAAGCTTGACAAGAAATTGGAAAGAACTCTTCTGCACTCATACCGCAAGGATTTGACAGCTCAA
GTTTCTGCTGAAACTGATCCAGTTCTTCTTCTGCCTAAAGTTGTTTCCCTGCTTTATATTCAGGTTCGCAATAAAGCTCTTCAGGCCCCTGGAAGGGCCA
TTTCTGTAGCTGTTTCTCGATTGAAGGACAAACTAGATGATTCAGCATTCAAGATCCTGACAGAATATCAAACTGCTACAGTAACACTTCTATCGCTTTT
ATCTGCTTCAACTGGTGATGAAGAAGACTGTACATCTGACAGGATTTTAAGTAAAAGGGAGCTTCTGGGGAACTTGATGCCAGCATTGAAAGGCCTAGTT
TTGGGAACCGCTCAATCTTGA
AA sequence
>Potri.001G234300.6 pacid=42792241 polypeptide=Potri.001G234300.6.p locus=Potri.001G234300 ID=Potri.001G234300.6.v4.1 annot-version=v4.1
MDAELLELARQFESAQQAKSSIRLSERNVVELVQKLHELHIIDFNLLHTVSGKEYITPEQLRHEMVLEIKKLGRVSLIDLADITGVDLYHVENQAQRVVS
DDPSGLMLIQGEIISQSYWDNVAEEINERLQECSQISLAEIAANLNVGSELVASMLEARLGTLVKGRLEGGQLYTPAYVTRVSAMVRGAARGVTVPTNLS
FLWGTLQQLLQAMDGAGGVATESSFFQSLFNGLAKEGEILGSLRAGVHWTPTVFATAQRECVDSFFSQNSFISYDTLQNLGISQPVQFLQSRYAEGIPLV
TAFAHPSMIEMLDAAVEDAIDRSSWIDSLSVLPTSFGSQDASKILSHCNSVQSALKGNKGMILGDSYVFSNGFIKDVYGRMEKELEVFRLSGSSGVILSD
DFHLVMEAKIRTDSGRSGEVNEKKKKKGKSSGARTEILLDDEEIIPLKSKKNQRKGKEASLVLSDTKKGAKKDLARTQEDDLNIPSDDWIMQKILTLVPD
FEEQADLAGLEDPQTILGPLANYMRPMLISSLKEKRKTLFSENAGKMKHLLDNLQKKLDEAFLNMQLYEKALDLFEDDQSTSAVLHRHLLRTMAASIGDM
LFHNLDMHNKLKNGINVEESPNSESITLGSAERTALAKSFPGSLSKKALAVVEALEGKRVEAFMTSLREVAEESGLLLKKLDKKLERTLLHSYRKDLTAQ
VSAETDPVLLLPKVVSLLYIQVRNKALQAPGRAISVAVSRLKDKLDDSAFKILTEYQTATVTLLSLLSASTGDEEDCTSDRILSKRELLGNLMPALKGLV
LGTAQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G46220 unknown protein Potri.001G234300
[exp]
0 1
AT1G06900 Insulinase (Peptidase family M... Potri.013G154600
[exp]
1.00 0.7878
AT4G36210 Protein of unknown function (D... Potri.007G016100
[exp]
25.27 0.6261
AT1G33360 ATP-dependent Clp protease (.1... Potri.013G089500
[exp]
30.85 0.6701
AT3G15920 Phox (PX) domain-containing pr... Potri.001G201900
[exp]
32.24 0.6845
AT5G53430 SET29, ATX5, SD... SET domain group 29 (.1) Potri.012G013900
[exp]
80.62 0.6820 SDG914
AT4G38350 Patched family protein (.1.2) Potri.009G167000
[exp]
89.44 0.6669
AT1G07110 FKFBP, ATF2KP, ... "fructose-2,6-bisphosphatase",... Potri.009G073800
[exp]
91.99 0.6538
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Potri.003G191401
[exp]
99.19 0.6348
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.004G201900
[exp]
119.24 0.6697
AT3G59910 Ankyrin repeat family protein ... Potri.017G001300
[exp]
146.52 0.6297

Potri.001G234300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.