Plant FIBer expression Database

Potri.001G234800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59740 555 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
AT3G46180 521 / 0 UTR5, ATUTR5 UDP-galactose transporter 5 (.1)
AT2G02810 117 / 4e-30 ATUTR1, UTR1 UDP-galactose transporter 1 (.1)
AT1G14360 112 / 4e-28 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G110500
[exp]
107 / 3e-26 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1)
Potri.016G139100
[exp]
102 / 2e-24 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005881
[exp]
562 / 0 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Lus10040866
[exp]
468 / 4e-167 AT5G59740 479 / 8e-172 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Lus10030495
[exp]
119 / 1e-30 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1)
Lus10012848
[exp]
97 / 6e-22 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF00892 EamA EamA-like transporter family
Representative CDS sequence
>Potri.001G234800.1 pacid=42789554 polypeptide=Potri.001G234800.1.p locus=Potri.001G234800 ID=Potri.001G234800.1.v4.1 annot-version=v4.1
ATGACCATTGCAATTGCTGGTATGGCCGATTCGTTATTATCAGGTGGCGTTAAAGAGAACAAGCTATGGAAAGGAGTCCTTGCTGTCGCCGGAATCATGA
CCACTCTTGTCATCTATGGTCTTTTACAGGAAAAGATCATGAGAGTCCCATATGGGTCAAACAAGGAATTCTTTAAGTACTCGTTGTTTCTTGTTTTCTG
CAACCGCATTACCACGTCTGCTGTCTCTGCTGCTGCTCTTGTCGCAAGTAAAAAAGCTTTGAATCCTGTTGCTCCTGTTCACAAGTACTGTCTCATATCA
GTATCCAACATACTGACCACAACTTGCCAGTATGAGGCGCTCAAGTATGTTAGTTTCCCAGTCCAGACACTCGCTAAGTGTGCCAAAATGATTCCTGTCA
TGGTATGGGGCACAATCATTATGCAAAAGAGATACAAAGGAATGGACTACTTTTTGGCTCTTCTAGTGACACTGGGCTGTTCAATTTTCATTCTATTTCC
AGCAGGAACTGAGATCAGTCCATACAGCAGAGGAAGAGAAAACACTGTTTGGGGTGTTTCCCTGATGCTTGGCTATCTCGGTTTTGATGGCTTTACAAGC
ACGTTCCAAGATAAGCTATTTAAAGGTTATGATATGGAGATTCACAATCAAATTTTCTATACAACATTGTGTTCTTGCATTCTCAGCTTGACAGGCCTTG
TATTACAAGGACATCTTCTTCCAGCCATAGATTTTGTGTTCCGCCATAATGATTGTTTCTTTGACATTGCATTGCTTTCCACCGTAGCAACTGCTAGCCA
GTTCTTCATTTCTTACACAATCCGCACATTTGGTGCTCTAACATTTGCTGCTATAATGACCACAAGACAGTTGGTGAGCATTGTGCTATCGTGTGTGTGG
TTCGCCCATCCTCTTAGCTGGGAACAATGGATTGGAGCTGTTATCGTCTTTGGTTCTCTGTATGCAAGAAACTTGTTGAAAAGCACACCTTCGAAGCTTC
CACCTTCTGAGCATACTCAAAATGGAGCGTCTAGTCCCTATGAAGCAAAACCCTTGATGCAGTGA
AA sequence
>Potri.001G234800.1 pacid=42789554 polypeptide=Potri.001G234800.1.p locus=Potri.001G234800 ID=Potri.001G234800.1.v4.1 annot-version=v4.1
MTIAIAGMADSLLSGGVKENKLWKGVLAVAGIMTTLVIYGLLQEKIMRVPYGSNKEFFKYSLFLVFCNRITTSAVSAAALVASKKALNPVAPVHKYCLIS
VSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTIIMQKRYKGMDYFLALLVTLGCSIFILFPAGTEISPYSRGRENTVWGVSLMLGYLGFDGFTS
TFQDKLFKGYDMEIHNQIFYTTLCSCILSLTGLVLQGHLLPAIDFVFRHNDCFFDIALLSTVATASQFFISYTIRTFGALTFAAIMTTRQLVSIVLSCVW
FAHPLSWEQWIGAVIVFGSLYARNLLKSTPSKLPPSEHTQNGASSPYEAKPLMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59740 UDP-N-acetylglucosamine (UAA) ... Potri.001G234800
[exp]
0 1
AT2G45240 MAP1A methionine aminopeptidase 1A (... Potri.014G067300
[exp]
1.00 0.7442 MAP1.3
AT2G26200 S-adenosyl-L-methionine-depend... Potri.006G225600
[exp]
8.36 0.6564
AT3G48240 Octicosapeptide/Phox/Bem1p fam... Potri.015G083400
[exp]
8.66 0.6512
AT5G49300 GATA GATA16 GATA transcription factor 16 (... Potri.002G199800
[exp]
10.39 0.6442
AT1G14060 GCK domain-containing protein ... Potri.013G099100
[exp]
14.83 0.6277
AT5G47920 unknown protein Potri.014G140000
[exp]
15.87 0.5888
AT5G54165 unknown protein Potri.015G004800
[exp]
17.02 0.6315
AT1G43190 PTB3 polypyrimidine tract-binding p... Potri.002G066000
[exp]
19.33 0.5542
AT3G16640 TCTP translationally controlled tum... Potri.005G024800
[exp]
22.80 0.6441 Pt-TCTP.1
AT5G02220 unknown protein Potri.008G057600
[exp]
30.88 0.6359

Potri.001G234800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.