Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04360 99 / 2e-24 RING/U-box superfamily protein (.1) AT5G43420 89 / 7e-21 RING/U-box superfamily protein (.1) AT3G16720 87 / 2e-20 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G72200 85 / 2e-19 RING/U-box superfamily protein (.1) AT2G27940 83 / 2e-19 RING/U-box superfamily protein (.1) AT4G33565 84 / 3e-19 RING/U-box superfamily protein (.1) AT1G20823 82 / 3e-19 RING/U-box superfamily protein (.1) AT5G17600 84 / 5e-19 RING/U-box superfamily protein (.1) AT1G72220 83 / 1e-18 RING/U-box superfamily protein (.1) AT1G23980 81 / 6e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101800 [exp] 100 / 3e-25 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 93 / 4e-22 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 92 / 5e-22 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 92 / 6e-22 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 88 / 1e-20 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 87 / 3e-20 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 87 / 4e-20 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 85 / 1e-19 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 81 / 3e-19 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016163 [exp] 94 / 1e-23 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10021197 [exp] 89 / 5e-21 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10015901 [exp] 84 / 4e-19 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10005275 [exp] 80 / 5e-19 AT2G42360 104 / 2e-28 RING/U-box superfamily protein (.1) Lus10006493 [exp] 82 / 2e-18 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10012745 [exp] 82 / 3e-18 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10037490 [exp] 80 / 2e-17 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10027736 [exp] 76 / 3e-17 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10002194 [exp] 76 / 8e-17 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10025338 [exp] 75 / 1e-16 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G235100.1 pacid=42790934 polypeptide=Potri.001G235100.1.p locus=Potri.001G235100 ID=Potri.001G235100.1.v4.1 annot-version=v4.1 ATGTCTTCAAGTCCAACGCCAGCCCCAGGACATGAATTTGAACGGCAGTCACATAGGAATCCGTTTGTGCTTGTGCCAGTTGCTCTTGTTTGCATCATCA TCCTCCTCTGGCTCATTTACTGCAAAATTCTAAAACGAATTTGGTGTGCAGTTGTTAGTGTAACTTTCTCTACAAACCAGGTTGATAGGAGACATCTAAA TGAGATTTTCTTTGAAGATCCTTCAATGCATTTTCAGTGTCATGGACTCGAGCCCTCCATGACGCGCGCTCTCCCCATCGCTCAGTTTGAGAAGAAGAAT AAAGAAGAATCAAGTCCAAGCAATAATGAATGTGCAGTATGCTTGGGTGAATTTCAAGAAGGAGAATGGCTGAAACATTTACCAAACTGTTGTCATGTCT TTCATACTGCTTGTATTGACACTTGGTTTCAGTCTCACACAAATTGTCCGCTTTGCAGATCACATGTCTTTAATCTCAGTCCCTGTCGTGATTTTTCTGT TTCTACGCACACACTGCTAGATATTCCAACGAGGGAAGAACTTTCCCAAGAAAGAGAAGCAAATTATCTAGCCCTACGCTCCCAGATCCTACAGAATTTA GCACTTGGACCTTAA
AA sequence Show only first row Show all	>Potri.001G235100.1 pacid=42790934 polypeptide=Potri.001G235100.1.p locus=Potri.001G235100 ID=Potri.001G235100.1.v4.1 annot-version=v4.1 MSSSPTPAPGHEFERQSHRNPFVLVPVALVCIIILLWLIYCKILKRIWCAVVSVTFSTNQVDRRHLNEIFFEDPSMHFQCHGLEPSMTRALPIAQFEKKN KEESSPSNNECAVCLGEFQEGEWLKHLPNCCHVFHTACIDTWFQSHTNCPLCRSHVFNLSPCRDFSVSTHTLLDIPTREELSQEREANYLALRSQILQNL ALGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04360			RING/U-box superfamily protein...		Potri.001G235100 [exp]	0	1
AT1G14430			glyoxal oxidase-related protei...		Potri.010G034200 [exp]	5.56	0.6879
AT2G17080			Arabidopsis protein of unknown...		Potri.004G182700 [exp]	7.74	0.6392
AT1G64295			F-box associated ubiquitinatio...		Potri.001G462650 [exp]	9.16	0.6223
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	55.89	0.5331
AT2G24670	B3		Domain of unknown function (DU...		Potri.013G065401 [exp]	56.55	0.5399
AT2G27940			RING/U-box superfamily protein...		Potri.010G245801 [exp]	57.59	0.6023
AT3G15370		ATHEXPALPHA1.24...	expansin 12 (.1)		Potri.001G401700 [exp]	70.55	0.5379
AT4G38140			RING/U-box superfamily protein...		Potri.004G209600 [exp]	73.02	0.5397
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.001G150001 [exp]	97.21	0.5500
AT3G24850	B3		Domain of unknown function (DU...		Potri.015G014700 [exp]	120.94	0.5548

Compare expression of checked genes

Potri.001G235100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.