Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01470 375 / 8e-133 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G36830 360 / 3e-127 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G26520 342 / 6e-120 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT1G73190 253 / 1e-84 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT5G47450 248 / 6e-83 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT3G16240 248 / 6e-83 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT1G17810 244 / 3e-81 BETA-TIP beta-tonoplast intrinsic protein (.1) AT4G17340 223 / 3e-73 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT2G25810 211 / 2e-68 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT3G47440 157 / 2e-47 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027200 [exp] 434 / 5e-156 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.010G209900 [exp] 372 / 1e-131 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.008G050700 [exp] 358 / 5e-126 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.006G121700 [exp] 338 / 1e-118 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 338 / 2e-118 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.004G216500 [exp] 311 / 2e-107 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1) Potri.009G005400 [exp] 309 / 7e-107 AT2G36830 355 / 7e-125 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.017G154800 [exp] 263 / 8e-89 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1) Potri.018G152100 [exp] 259 / 3e-87 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005885 [exp] 383 / 4e-136 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10040863 [exp] 377 / 2e-133 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1) Lus10021510 [exp] 365 / 5e-129 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10022611 [exp] 365 / 6e-129 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10003288 [exp] 344 / 1e-120 AT4G01470 388 / 6e-138 tonoplast intrinsic protein 1;3 (.1) Lus10023913 [exp] 340 / 6e-119 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10014411 [exp] 332 / 1e-115 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10038293 [exp] 248 / 8e-83 AT3G16240 396 / 2e-141 delta tonoplast integral protein (.1) Lus10025808 [exp] 244 / 3e-81 AT3G16240 389 / 2e-138 delta tonoplast integral protein (.1) Lus10018256 [exp] 241 / 4e-80 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.001G235300.1 pacid=42791678 polypeptide=Potri.001G235300.1.p locus=Potri.001G235300 ID=Potri.001G235300.1.v4.1 annot-version=v4.1 ATGCCAATCACTAGCATTGCATTCGGATCTCCAGCAGAGGCTGGGCAACCTGATGCACTCAGGGCAGCTCTAGCTGAGTTCATTTCTATGCTCATTTTTG TTTTTGCAGGGGAAGGCTCTGGCATGGCTTTCAATAAGCTTACCGATAATGGCTCCTCAACCCCGGCCGGGCTAGTAGCTGCATCGTTGGCTCACGCCTT TGCACTTTTTGTTGCGGTGTCAGTCGGTGCTAACATTTCTGGCGGGCATGTAAATCCTGCCGTTACATTCGGTGCCTTCATTGGTGGCCATATAACATTC ATTAGAAGTCTTCTGTACTGGGTTGCCCAGTGCCTGGGATCTGTAGTTGCTTGCTTGCTTCTTAAGTTGGCAACTGGTGGACAGGAAACATCGGCCTTTG CTCTATCATCTGGAGTTGGTGCATGGAATGCAGTTGTTTTCGAGATTGTGATGACCTTCGGTTTGGTTTACACTGTGTATGCAACAGCTGTTGACCCAAA GAAGGGTGACATTGGGATAATTGCACCCATTGCTATTGGTTTCATTGTGGGTGCTAACATCTTAGCTGGTGGTGCTTTTGATGGCGCATCCATGAACCCG GCAGTCTCCTTTGGGCCAGCTGTTGTAAGTTGGACATGGGACAGCCACTGGGTCTACTGGCTTGGTCCATTCGTTGGGTCTGCCATTGCTGCCATTGTCT ACGAGGTCATTTTCATTAACCCAAGCACACACGAACAGCTCCCCTCAACAGATTTTTAA
AA sequence Show only first row Show all	>Potri.001G235300.1 pacid=42791678 polypeptide=Potri.001G235300.1.p locus=Potri.001G235300 ID=Potri.001G235300.1.v4.1 annot-version=v4.1 MPITSIAFGSPAEAGQPDALRAALAEFISMLIFVFAGEGSGMAFNKLTDNGSSTPAGLVAASLAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITF IRSLLYWVAQCLGSVVACLLLKLATGGQETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNP AVSFGPAVVSWTWDSHWVYWLGPFVGSAIAAIVYEVIFINPSTHEQLPSTDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.001G235300 [exp]	0	1
					Potri.004G099466 [exp]	1.00	0.8580
					Potri.008G144650 [exp]	3.46	0.8229
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Potri.006G128200 [exp]	4.69	0.7624
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Potri.006G128000 [exp]	7.21	0.7264
AT4G24480			Protein kinase superfamily pro...		Potri.002G111200 [exp]	7.48	0.7756
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	11.48	0.8324
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	12.40	0.7350
AT2G39210			Major facilitator superfamily ...		Potri.002G133900 [exp]	15.42	0.7069
					Potri.003G212150 [exp]	15.96	0.6807
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.001G113400 [exp]	17.88	0.7673

Compare expression of checked genes

Potri.001G235300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.