Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59770 241 / 3e-80 Protein-tyrosine phosphatase-like, PTPLA (.1) AT5G10480 93 / 5e-23 PEP, PAS2 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010900 [exp] 91 / 3e-22 AT5G10480 368 / 4e-131 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040862 [exp] 343 / 3e-121 AT5G59770 235 / 5e-78 Protein-tyrosine phosphatase-like, PTPLA (.1) Lus10024408 [exp] 71 / 5e-15 AT5G10480 281 / 2e-97 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) Lus10025335 [exp] 70 / 6e-14 AT5G10480 267 / 2e-89 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04387 [poplar] [flax] PTPLA Protein tyrosine phosphatase-like protein, PTPLA
Representative CDS sequence Show only first row Show all	>Potri.001G235400.3 pacid=42788238 polypeptide=Potri.001G235400.3.p locus=Potri.001G235400 ID=Potri.001G235400.3.v4.1 annot-version=v4.1 ATGCCTGCATTTTCGAAGCTCTATCTCTTCGCTTACAATTCCCTCCAGGCCTTTGGATGGGCAGTTTCTCTCTTTGCAATTCTGATTAACTTCTTTTCCA CTCACTCACTCAATGGAGCCTATGCTTCTGCTGGAGACCTAATCTGTCTGTTGCAAACTGTTTCTTTCTTGGAAGTGATTCATGGAGCATTGGGCGTTGT CCCAAGTGGGGTGTTGTTCCCTTTTATGCAGTGGGGAGGAAGAACCCATTTTGTTCTGGCCATTGTTCGTCAAATCATTGAGGTCCAGGAATTACCATCA GTTTTTATAACTTTTGTTGCTTGGAGTATGGCCGAGGTAATTAGGTACTCACATTATGCTTTGAACTGCGTCGGAAGTTGCCCATCTTGGATAACATACC TCAGGTATACCGCGTTCATTGTGCTGTATCCTATAGGACTTGCTCCTGGTGAAATGTGGACCATGTACCAAGCTCTTCCGTTTGTAAAGAAGAAGAATCT CTATGCAGATTTCTTTGCTGCTTTCCCTTTCAGCTATTATGATTTTCTCAGGGTTGTGCTTCTCTGCTATCCTTTCCTCTGGTTAAATCTTTACCGGTAT TTGTTAAAGCAACGACGGTCAAAATTGGGTAGGCATCAAGAGACAAAGAAGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.001G235400.3 pacid=42788238 polypeptide=Potri.001G235400.3.p locus=Potri.001G235400 ID=Potri.001G235400.3.v4.1 annot-version=v4.1 MPAFSKLYLFAYNSLQAFGWAVSLFAILINFFSTHSLNGAYASAGDLICLLQTVSFLEVIHGALGVVPSGVLFPFMQWGGRTHFVLAIVRQIIEVQELPS VFITFVAWSMAEVIRYSHYALNCVGSCPSWITYLRYTAFIVLYPIGLAPGEMWTMYQALPFVKKKNLYADFFAAFPFSYYDFLRVVLLCYPFLWLNLYRY LLKQRRSKLGRHQETKKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	0	1
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.018G054700 [exp]	1.00	0.8160
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	1.41	0.8110
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	2.82	0.7887
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	3.46	0.7972	PDF1.2
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	4.47	0.7859
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	4.89	0.7715
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.015G120400 [exp]	5.19	0.7262
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.012G098500 [exp]	5.74	0.7237
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.012G040700 [exp]	15.16	0.6963	GBP.6
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	24.00	0.7516	Pt-ATMPK16.1

Compare expression of checked genes

Potri.001G235400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.