Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59790 344 / 4e-115 Domain of unknown function (DUF966) (.1) AT3G46110 266 / 7e-86 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 165 / 3e-45 Domain of unknown function (DUF966) (.1) AT5G10150 136 / 2e-35 Domain of unknown function (DUF966) (.1) AT1G05577 102 / 7e-24 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027500 [exp] 528 / 0 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 222 / 2e-66 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 217 / 9e-65 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 181 / 2e-53 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 164 / 7e-48 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 141 / 3e-37 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 100 / 1e-22 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 100 / 1e-22 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040860 [exp] 355 / 2e-119 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 303 / 1e-98 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 296 / 1e-96 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 221 / 2e-66 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 217 / 4e-65 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 216 / 1e-64 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 127 / 9e-34 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 122 / 1e-31 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 102 / 2e-23 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 96 / 2e-21 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [poplar] [flax] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Potri.001G235700.1 pacid=42793747 polypeptide=Potri.001G235700.1.p locus=Potri.001G235700 ID=Potri.001G235700.1.v4.1 annot-version=v4.1 ATGGCCGCTGTGAGTTCAAGAGGTGGCAGAAACTCTGAAGGAGTCCAGATTCCGAGGAACAGAGAAACCAGTCCTGAGAGATGCAGAGCAGCATGGAGCG AATCCAATAAGTTGTCCAGAAAAGTCCCTGTAGTTTACTATCTGTCCAGAAATGGTCAGCTTGAGCATCCCCATTTCATGGAGGTCCCTCTCTCTTCTAA TGACGGCGGCCTCTACCTTAGAGATGTAATCAACCGGTTAGACCTCCTTCGAGGCAAAGGCATGGCTGGCCTCTACTCCTGGTCCTCTAAACGGAGCTAC AAAAACGGCTTCGTTTGGCACGACTTAGCCGATAACGATTTCATTCACCCAGCTCACGGTCACGAGTACGTTCTCAAAGGATCAGAGCTTCTCGACCATT CGAACAAACAGCTACTCCTCGAAACGAAACCTCAAGAAACTCTCCAATCATCATCCAACAGTCAAGACTCGGATTTTCCAGTTACCTCGAGGCGTAGGAA CCAGTCCTGGGGCTCAATCGATCTTAACGAGTACAAAGTTTACAAGGCTGAGTCGCCCTCCGAGTCGAATCGGAAACTCGCTGCTGACGCGTCGACTCAG ACTGATGATAGCAGGAGGAGGAGGAGGCAGGCCAAACCTGTAGTCGAAGGATTGCAGGAAGAGAAGAAAAATAGTCAGGAACTGGAGGTGAACGGAGAAG AGATTATTGAGATTTCACCCCCGCCGTCAGATTCCAGCCCAGAAACTTTGGAGTCTTTGATGAAGGCTGATGGACGGGTGATTTTGGGCGCTAGTGGTGA AGGGAGTGGCTTGAATTTGAGTCAAACGGTGGGGAACTGTGGGAGGATGAAAGCGTCTACGGTTCTGATGCAGTTGATATCGTGCGGTTCGATCTCGTTC AGGGACTGTGGGGCTACGGCAGTGAAGGAGCAAGGATTGTCGTTGATTACTGGACATTATAAGGGGAGATTGCCACGTGGAGGGAACCGCGAGGGAACAC CGAGGGAAATTTCGAACAGGGTAAAATTGGAAGATAAGGAGTATTTTAGTGGGAGCTTGATCGAGACAAAGAAGGTGGAGGTGCACGCTTTGAATTTGAA GAGGTCCAATTCCTATAATGCCGATAGGAGCTCGCAGCTGCACTTGGCAGAAAAGGAGATTGAGGGGGTGCGCACCAAATGCATACCAAGGAAGTCAAAA GCAATGGCAACCAGAAAAGAAAGCAACGTTAATGTTGTTGTTGATCACAATAATAATAATAATAATAATAATAATAACGGCAGTCAAGCAGGGAGCAGAA GACTCGAGGTCCAACAAGTCGAAGATGTGGCTCGATGA
AA sequence Show only first row Show all	>Potri.001G235700.1 pacid=42793747 polypeptide=Potri.001G235700.1.p locus=Potri.001G235700 ID=Potri.001G235700.1.v4.1 annot-version=v4.1 MAAVSSRGGRNSEGVQIPRNRETSPERCRAAWSESNKLSRKVPVVYYLSRNGQLEHPHFMEVPLSSNDGGLYLRDVINRLDLLRGKGMAGLYSWSSKRSY KNGFVWHDLADNDFIHPAHGHEYVLKGSELLDHSNKQLLLETKPQETLQSSSNSQDSDFPVTSRRRNQSWGSIDLNEYKVYKAESPSESNRKLAADASTQ TDDSRRRRRQAKPVVEGLQEEKKNSQELEVNGEEIIEISPPPSDSSPETLESLMKADGRVILGASGEGSGLNLSQTVGNCGRMKASTVLMQLISCGSISF RDCGATAVKEQGLSLITGHYKGRLPRGGNREGTPREISNRVKLEDKEYFSGSLIETKKVEVHALNLKRSNSYNADRSSQLHLAEKEIEGVRTKCIPRKSK AMATRKESNVNVVVDHNNNNNNNNNNGSQAGSRRLEVQQVEDVAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59790			Domain of unknown function (DU...		Potri.001G235700 [exp]	0	1
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	12.60	0.8624
AT1G61215		BRD4	bromodomain 4 (.1)		Potri.004G036900 [exp]	12.72	0.7823
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	13.41	0.8094	Pt-SCL1.1
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.006G139400 [exp]	15.29	0.8553
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	16.73	0.7865
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.013G129800 [exp]	18.00	0.8549
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	19.59	0.8522
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.011G083900 [exp]	19.62	0.8519
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G025300 [exp]	21.21	0.8514
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Potri.001G189500 [exp]	22.80	0.8415

Compare expression of checked genes

Potri.001G235700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.