Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37430 132 / 3e-39 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G59820 121 / 6e-35 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT3G46080 113 / 9e-32 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28710 109 / 2e-30 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46070 109 / 2e-30 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 105 / 8e-29 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53600 102 / 1e-27 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 95 / 1e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 96 / 2e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 91 / 5e-22 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027700 [exp] 267 / 4e-92 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 156 / 1e-48 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 146 / 2e-44 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 96 / 9e-24 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 95 / 2e-23 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 94 / 5e-23 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 92 / 6e-23 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 92 / 3e-22 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 86 / 3e-20 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030330 [exp] 131 / 3e-38 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 121 / 2e-34 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10023433 [exp] 112 / 4e-31 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10040312 [exp] 111 / 2e-30 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021409 [exp] 97 / 2e-24 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 90 / 2e-22 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 87 / 9e-21 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 87 / 2e-20 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 85 / 3e-20 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10014631 [exp] 73 / 2e-15 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G235800.1 pacid=42792342 polypeptide=Potri.001G235800.1.p locus=Potri.001G235800 ID=Potri.001G235800.1.v4.1 annot-version=v4.1 ATGAAGAGAGATAGAGAACAGGCAGAGATAGACTTGGCCAAATGCTTGATGCTACTTTCTAAAGTTGGCCAAGCTGATCACGAGATACTAACTAATTATA GATCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAGGGGCCGGGGCCGGGGCCGGTCGCTCATTTTCATGCAAAACATGCAACAAGAATTTCCCTTCATT TCAAGCATTAGGAGGCCACCGTGCAAGTCACAAGAAACCAAAACTCAAGGAATCAACTGGGAACTTGTTGAAGCTGCCTAATTCGCCTTCAAAGCCAAAA ACTCACCAGTGCTCCATTTGCGGCCTTGAATTTCCTCTCGGGCAAGCACTTGGAGGTCACATGAGGAGACATCGGGCGCCTCATAATGTTGATACCACCA GTACTAGTAGTAAAGATCATGAATTGGCAGCTGTGACTCAGCCGCCTTTCTTACCCGCTGTCCCAGTTTTGAAGAGATCCAATAGCAGCAAGAGAGTTCT GTGCTTGGATTTGAGCTTGGCCCTGCCTATGTATCAGAATGACTCGGAGTTGCAGTTAGAGAAGGTCGATCGTCCCATGTTGAGATGTTTTATCTAA
AA sequence Show only first row Show all	>Potri.001G235800.1 pacid=42792342 polypeptide=Potri.001G235800.1.p locus=Potri.001G235800 ID=Potri.001G235800.1.v4.1 annot-version=v4.1 MKRDREQAEIDLAKCLMLLSKVGQADHEILTNYRSAAAAAAAATAGAGAGAGRSFSCKTCNKNFPSFQALGGHRASHKKPKLKESTGNLLKLPNSPSKPK THQCSICGLEFPLGQALGGHMRRHRAPHNVDTTSTSSKDHELAAVTQPPFLPAVPVLKRSNSSKRVLCLDLSLALPMYQNDSELQLEKVDRPMLRCFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Potri.001G235800 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	1.41	0.9281
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.007G048101 [exp]	1.73	0.9301
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	4.89	0.9082
AT2G27080			Late embryogenesis abundant (L...		Potri.009G158900 [exp]	5.29	0.9155
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.001G243300 [exp]	5.65	0.8972
AT1G18740			Protein of unknown function (D...		Potri.005G192600 [exp]	6.48	0.8976
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.013G151000 [exp]	6.70	0.9146
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.005G141800 [exp]	7.07	0.8950	SKIP2.2
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.006G016200 [exp]	9.05	0.8247	GRAS52
					Potri.016G004500 [exp]	9.48	0.8964

Compare expression of checked genes

Potri.001G235800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.