Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13850 88 / 2e-23 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 86 / 6e-23 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G47320 79 / 4e-19 RPS19 ribosomal protein S19 (.1) AT5G61030 80 / 5e-19 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 79 / 5e-19 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G06210 73 / 1e-17 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21660 69 / 4e-16 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT1G18630 69 / 4e-16 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT3G08000 69 / 6e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 67 / 6e-16 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059000 [exp] 85 / 1e-22 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 83 / 2e-20 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 82 / 2e-20 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.001G319900 [exp] 80 / 2e-20 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.006G208500 [exp] 77 / 3e-19 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G116400 [exp] 76 / 2e-18 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G319800 [exp] 74 / 5e-18 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.004G155300 [exp] 74 / 6e-18 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.008G022280 [exp] 72 / 4e-17 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022551 [exp] 90 / 4e-24 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 89 / 1e-23 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10017852 [exp] 91 / 2e-23 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 90 / 4e-23 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10043158 [exp] 87 / 8e-23 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 86 / 1e-22 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10021154 [exp] 86 / 2e-21 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 83 / 8e-20 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10023569 [exp] 75 / 3e-18 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10025573 [exp] 74 / 1e-16 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G236300.1 pacid=42793365 polypeptide=Potri.001G236300.1.p locus=Potri.001G236300 ID=Potri.001G236300.1.v4.1 annot-version=v4.1 ATGCAGTGTCTGAATCGAAGTGTCAGTCTGCCCTTAGCCAGACGGTTATTGGCCCGCCACTTATCCACCAAATTATTTGTTGGAGGGCTTTCTTATGACA CCAATGAAACTGTTTTAAAGGATGCTTTTGGAAAATATGGTGAAATAATTGAAGCAGTGAAAGTGATATGTCACCGAGTGTATGGTGAATCCAAAGGCTA CGGCTTTGTGCAGTTCTCTTCTGAAGCTGCAGCCAGCACAGCTTTGAAAGAAATGGATGGCCAGTTGCTGGATGACCGAAATATCCGTGTGCATTATGCT CATAAGTGGTCATGA
AA sequence Show only first row Show all	>Potri.001G236300.1 pacid=42793365 polypeptide=Potri.001G236300.1.p locus=Potri.001G236300 ID=Potri.001G236300.1.v4.1 annot-version=v4.1 MQCLNRSVSLPLARRLLARHLSTKLFVGGLSYDTNETVLKDAFGKYGEIIEAVKVICHRVYGESKGYGFVQFSSEAAASTALKEMDGQLLDDRNIRVHYA HKWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G236300 [exp]	0	1
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.016G015550 [exp]	15.96	0.6824
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Potri.011G144800 [exp]	17.14	0.7024
AT5G27660			Trypsin family protein with PD...		Potri.013G018300 [exp]	20.32	0.6495
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	30.29	0.6274	ORG4.2
					Potri.015G068850 [exp]	47.77	0.6295
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G014750 [exp]	47.90	0.6282
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.016G032666 [exp]	63.49	0.6116
AT5G12240			unknown protein		Potri.001G274400 [exp]	70.00	0.5752
					Potri.019G089100 [exp]	71.62	0.6108
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	72.12	0.5851

Compare expression of checked genes

Potri.001G236300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.