Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59900 1070 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 352 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 320 / 5e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 319 / 7e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 318 / 7e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 310 / 8e-93 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 315 / 1e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 310 / 8e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G28010 301 / 7e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 292 / 1e-87 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 356 / 2e-107 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 346 / 5e-103 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 333 / 6e-102 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 332 / 4e-100 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G040200 [exp] 331 / 6e-99 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 326 / 4e-98 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 329 / 5e-97 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.016G025600 [exp] 318 / 2e-96 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 314 / 4e-95 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010410 [exp] 1142 / 0 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 1125 / 0 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 1124 / 0 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 359 / 2e-110 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 342 / 6e-104 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 344 / 2e-103 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 337 / 3e-103 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 330 / 2e-98 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 320 / 4e-96 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008650 [exp] 309 / 6e-92 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G236800.1 pacid=42792657 polypeptide=Potri.001G236800.1.p locus=Potri.001G236800 ID=Potri.001G236800.1.v4.1 annot-version=v4.1 ATGAAATTCCATCGCTGTCACCCGCATAGATTAGTCTTAAACCCCATCCCCATCTTCCAAACAAAGCCCAAACACTTGTACTGCACCTCTGCTATTCAAG ACAATGACGTTAAAGACTCGCAATTCATAGCGACCCTCAGGAACATCGTTCGAGGAAAGGAAAGCTGGAAAATCGCTTTTAACGATCCGTTCATTTCAAC TAAATTAAAGCCTCACCATGTTGAGAAGGTCTTGTTGCTTACTCTTGATGATACCAGGTTAGCTTTGAGGTTTTTTAACTTCTTGGGTTTGCACAAAAAC TTTAACCACTCTACCATGTCCTTCTGTATTCTAATTCATGCCCTTGTTAATGCTAATTTATTCTGGCCTGCTTCTTCGCTTTTGCAAACGCTGCTTCTTC GTGGGGGGTTGGATCCAAGAGAGGTTTTTGAGGCTCTCTTGGACTGTTTCGAGAAATGTGACTTCATTTCTAGTTTGGGTTTTGATTTGTTGATTCAGAG TTATGTGCAGGAGAAGAGAATGTTTGATAGTGTTTTGATATTCAGGTTGATGAGGCAGTGTGAATTGATGCCTCAAGTTAGGACCTTGGGTGAAGTATTA AATGGGCTTGCCAAGATCAGGCGAGTCGATATGGTTTTAGTGTTGTTTGGTGAGATTTTGAGTATGGGTATTAGGCCTGACATTTATATTTATGTGGCAG TAATTCGAAGTTTCTGTGAGTTGAAGAATTTTGCTAAGGCCAAGGAAATGATTCAGCGAATGGAGTCTAGCGATTTGAATGTAGTGGTGTATAATGTGTT AATTCATGGGCTATGCAAGAACAAGAGAGTTTGGGAGGCTGTTGAGATCAAGAATGGTCTTATTCAAAAGGGATTGACAGCTAGCGAGGTTACTTATTGT ACATTAGTTCTTGGATTATGTAAAGTGCAAGAGTTTGAGGTTGGTGCAGGGGTAATGGATGAAATGATTGAGTTGGGGTTTGTTCCAACTGAAGCAGCTT TGTCAAGTCTTGTTGAAGGGTTGAGGAGGAAGGGGAAGGTAGTCGATGCTTTTGATTTGGTTAACAGGGTGAAGAAAGTTGGGGCGATGCCTAGTTTATT TGTCTACAATGCATTAATCAATTCTTTATGTAAAGATGGTAAATTTGATGAAGCAGAGTTGCTTTTCAAGGAAATGGGAGAGAAGGGCTTATGTGCAAAT GATGTCACTTATTCTATTTTGATCGATTCATTTTGTAGAAGGGGAAAACTGGATACTGCAATTCATTTTCTTGGTAAAATGATCATGGCAGGGATAAAAA TTACAGTCTATCCCTACAATTCCTTGATAAATGGTCACTGCAAGTTGGGGAATTTGAGTGCAGCGGTGTCTTTTTTTGATGAGATGATTGATAAAGGATT GAAACCTACTGTGGTATCCTACACATCATTAATAAGTGGATACTGCAACAAAGGCAAGTTGCATGAGGCATTCAGGCTGTATCACGAGATGACTGGGAAG GGCATTGCACCAAACACGTACACATTTACCACCCTAATATCTGCTCTTTTTCGAGCAAATAGGATGACTGATGCTTTTAGATTGTTTGACGAAATGTTAG AGCAGAACATGATGCCAAATGAGGTGACTTATAATGTTATGATAGAAGGACACTGTAAGGAAGGAAACACAGTAAAAGCCTTTGAATTGCTCAATCAAAT GGTACAAAAGGGTCTTGTTCCAGATACATATACTTATAGGCCTCTAATAAGCAGTCTTTGTTCTACTGGTAGAGTATGTGAGGCAAAAAAGTTTATTGAT GACCTTCACAGAGAGCATTTTAAGTTAAATGAGATGTGTTACAGCGCTCTTCTACATGGTTATTGCAAAGAAGGCAGATTGAGAGATGCATTGGGTGTTT GTCGTGAGATGGTAAAGAGAGGAGTAGACATGGATCTTGTGTGTTATGCTGTACTCATAGATGGAACTATAAAAGAACAAGATACAAGTGCAGTATTTGG TCTTTTGAAGAATATGCATGACCAGAGATTGAGGCCTGATAAAGTAATATACACAAGCATGATTGATGGGTACAGCAAAGCTGGGAGTGTTAAGAAGGCG TTTGGAATTTGGGATATAATGATTGATGAAGGATGTACTCCAAATATTGTCACATACACTACCCTGATAAATGAATTATGCAAAGCAGGACTCATGGATA AGGCTGAGCTTCTTTGGAAGGAAATGCTAGTTAGCAATTCAACTCCAAATCACGTTACTTATTGTTGTTTCCTTGATCACCTCGCCAGGGAAGGGAGCAT GGAGAAAGCTGTTCAGCTGCATAATGATATGCTTAAAGGGCTTTTAGCAAACACTGTTTCCTATAATATACTTGTCCGTGGCTTTTGCAAATTGGGCAGG GTTGAGGAGGCAACCAAGCTCCTGGATGAAATGATAGACAACGCTATTTTTCCAGATTGCATTACTTATTCTACAATTATATATCAGTGCTGTAGAAGGG GTAATTTAGATGGAGCTATTGAATTTTGGGACACGATGCTAAATAAGGGTCTGAAGCCTGATACACTAGCGTACAATTTTTTGATATATGGTTGCTGCAT TGCAGGAGAACTGGGAAAGGCTTTTGAGTTGCGAGATGACATGATAAGAAGGGGCGTGAAGCCAAATCAGGCTACACACAAGTCTCTTAGTCATGGAGCT TCAAGGAAGTTTTCTATTTCTACCCACCCAGTTATGCCTGAAAATTAG
AA sequence Show only first row Show all	>Potri.001G236800.1 pacid=42792657 polypeptide=Potri.001G236800.1.p locus=Potri.001G236800 ID=Potri.001G236800.1.v4.1 annot-version=v4.1 MKFHRCHPHRLVLNPIPIFQTKPKHLYCTSAIQDNDVKDSQFIATLRNIVRGKESWKIAFNDPFISTKLKPHHVEKVLLLTLDDTRLALRFFNFLGLHKN FNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVL NGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYC TLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCAN DVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFID DLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKA FGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGR VEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGA SRKFSISTHPVMPEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59900			Pentatricopeptide repeat (PPR)...		Potri.001G236800 [exp]	0	1
AT3G47850			unknown protein		Potri.012G072600 [exp]	2.44	0.7334
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G226500 [exp]	4.12	0.7533
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	4.24	0.6951
					Potri.008G009201 [exp]	4.47	0.6950
AT4G14590		EMB2739	embryo defective 2739 (.1)		Potri.001G277200 [exp]	6.32	0.6962
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	7.00	0.6987
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	10.81	0.7239
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	19.13	0.7004
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	26.32	0.6913
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	34.77	0.6462

Compare expression of checked genes

Potri.001G236800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.